result

Gene information

Detail information of g442725

Location

Gene	Chr	Start	End	Strand
g442725	Scaffold_81599:HRSCAF_464685	245777	249290	-

Sequences

CDS

>g442725.t1
ATGAATACACCAAGACCGAAGCGCATTGTAGGGAAGTATGAACTTGGTAGAACAATTGGAGAGAACATGTTGCAATCAAGATACTTGATAAGCAGAAAGTTCTCAAAACACAAACTGGTTGATCAGATTCAGCGTGAAATTGCTACGATGAAGTTAATAAAACATCCCAATATTGTTCGCCTACATGAGGTAATGGGGAGTAGAACAAAGATATTTATTGTTCTTGAATATGTTACAGGAGGAGAGCTGTTTGACAAAATTGTTAATCATGGCCGAATGAATGAGGATGAAGCTCGGAGGTATTTTCACCAACTAATCAATGCAATTGATTTTTGCCATAGCAGAGGAGTGTATCACCGTGATTTAAAGCCTGAAAACTTACTGCTCGACGCATATGGTATTCTCAAAATTTCGGATTTTGGGCTTAGTGCACTTTCTCATCAAGTCAGGGAAGACGGCCTTCTCCATACTTCATGTGGCACTCCAAATTATGTTGCTCCTGAAGTGCTTAATGATGGAGGTTATGACGGAGCAGCTGCAGATTTATGGTCTTGTGGTGTTATTTTATATGTATTACTCACTGGTTGCTTGCCTTTTGATGATTCTAACCTCATGAGATTGTATGAGAAGATTTCAAATGCAGAGTTTACGATCCCTTCTTGGTTTTCTAGTGGAGCAGGAAACTTGCTGAAGAGAATTTTAGATCCTAATCCAACGACGAGAATTACCATTGGGGAAATATTGAAGGATAAGTGGTTTAAGAAAGGTTACAAACGCCCTGCTTTTGACGACAAGTACAATACAAACCTGGATGATGTAGCTGCTGCTTTCAAGGACTCGGAAGATTCTACTTCGGATGCTGAAGATGCAAAACCTGCAAGTATGAATGCGTTTGAATTGATCTGCTCAATGTCCAAAGGAATGGACCTGGGAAACTTGTTTGAAACGAAACAGGAATTTAAAACAGAGATGAAATTCACATCAAAGTATTCTGCCAATGAAATTACAAGCAAGATTGAGGAGGCTGCAAAGCCACTTGGCTTTGATATTCAAAAGAAAAAGTACAAGATGAGACTGCAAAATTCTACTGAAGGGAGGAAAGGAAATCTTAATGTTGCAACTGAGATACGTCAAGTGGCACCTTCTTTCCATATGGTTGAGCTTAAGAAATCTAAGGGAGACACCCTAGAGTTCCAAAATTTTTACCAGAAGCTATCGGCTGGCCTGAAGGATGTAGTGTGGAAAACCGAGGATGAAATGGAAGCTCATTTTCATGAAAGATGA

Protein

Gene

>g442725.t1
ATGAATACACCAAGACCGAAGCGCATTGTAGGGAAGTATGAACTTGGTAGAACAATTGGAGTAGGAACATTCGCAAAAGTTCGATTCGCAAGAAACATTGAAACAGGAGAACATGTTGCAATCAAGATACTTGATAAGCAGAAAGTTCTCAAAACACAAACTGGTTGATCAGGTTTAAACCAAATACTAACCATCACATCTCATGCATCTTCATTTTACTTTCTGGAATTGCATGTTTTCACCATCTGATCTATTTTTATAACAATAGAAAACTTAATTATTTTATGTGAATTTTGGTGCAGATTCAGCGTGAAATTGCTACGATGAAGTTAATAAAACATCCCAATATTGTTCGCCTACATGAGGTACAATCTGAGGCCATTGCTAAGATATTATTTTATTGCATCTAGCCTTACATCATGTTATGCACATTGTCAAAAAACATTGTTTGTTATTACAAGAAAACATTCAAGTCACATTTGAATTATGTCAAGTTAGGCCTGTTTCTTTGTCATGACTCGTATGCCCCATTCTTAAAATATTTTACTTTTTGCAGGTAATGGGGAGTAGAACAAAGATATTTATTGTTCTTGAATATGTTACAGGAGGAGAGCTGTTTGACAAAATTGTAAGCTACCAATTCTAAAACAATTTACTCGTTATCATTTTTAAGCGAGAGCAAAATGTATAACGTAACAGAAAATTATTTTCCAACTATGTAGGTTAATCATGGCCGAATGAATGAGGATGAAGCTCGGAGGTATTTTCACCAACTAATCAATGCAATTGATTTTTGCCATAGCAGAGGAGTGTATCACCGTGATTTAAAGGTGAAAATTGTGCCAAATATTCAGTTTTATTATATAAACGTAATAATGCATAATTAAGTTTATTTTACTTTTTTTGTAGCCTGAAAACTTACTGCTCGACGCATATGGTATTCTCAAAATTTCGGATTTTGGGCTTAGTGCACTTTCTCATCAAGTCAGGGTAATAATTCAAGTAAACTTAAGTTACAATTCAACATATTCCTCTCTCTTTTACCATAAAATTTATGTATGCAACTATTTTTTTATATATAGGAAGACGGCCTTCTCCATACTTCATGTGGCACTCCAAATTATGTTGCTCCTGAAGTGCTTAATGATGGAGGTTATGACGGAGCAGCTGCAGATTTATGGTCTTGTGGTGTTATTTTATATGTATTACTCACTGGTTGCTTGCCTTTTGATGATTCTAACCTCATGAGATTGTATGAGAAGGTGAGAAATTATGCATGTTTGAAGCACTTAGTTTCAGTTCCTTCTGTTAAAAACTTAAAATATTTAGCTTATGAATTTCATTGCAATATGCAGATTTCAAATGCAGAGTTTACGATCCCTTCTTGGTTTTCTAGTGGAGCAGGAAACTTGCTGAAGAGAATTTTAGATCCTAATCCAACGACGGTCAGTATCCCACATATATCTGGAATATTTCCCATTTTAGCCTATTTCAGAAAATTCATACATTTAAACTACTTTGTAAATCATTTTTAAAAAATCAACTTTTGCAAATATCGCAATTTTAGTGAGTTAAAGATGGTGCTAAGACATGATTTTTATTTTTGGAAAAAGTCACTGATATTATTTGAAACACACACACATATATAAATATAATGTACTCTCTAAAACCCTGATATGAAACGTTACTTTTGTTATGCAGGCAAAAACAACATGTCTTTGGTTTAAATATGAAATATGTTTTTGAAAGTGGTCGAAATGAGAAAAATGTCTCCTATACCTCTATGTGCATGCTATGTGTTTTTTCCCCATACCATTATCATTAAACTTCTTACTATTGTATGCAGAGAATTACCATTGGGGAAATATTGAAGGATAAGTGGTTTAAGAAAGGTTACAAACGCCCTGCTTTTGACGACAAGTACAATACAAACCTGGATGATGTAGCTGCTGCTTTCAAGGACTCGGAAGTGAGTCATTTTTTGTTATTAACATTGCTTACTTTTCTAGTTTTGGTTGTAGTAAGTCCTTCAGTATTAATTTTAAGTTCTTTGTTAGGATTCTACTTCGGATGCTGAAGATGCAAAACCTGCAAGTATGAATGCGTTTGAATTGATCTGCTCAATGTCCAAAGGAATGGACCTGGGAAACTTGTTTGAAACGAAACAGGTACAATCAAAATTTTCAAAATGGGATTCAAATTGTAGATCGTAAAGTTTCAAATTTCAAATTTATTTGAATCTTTGATCTTAGATATAAAAGATTTACATATTAATGAGCATTATATATGTGTACTAGAAATTTATCTCTATGTAGGTTATTAGATGGCATTAAAGTATGTGAAAACATAGATTGTTTTCCCATATGAATAATTTATATGTTAAATTGATTTTTTACGATAGAGCTTGTGCATGTAAATCTAAAATCAAGTTTTTTTTCATCTAAGGTGGCTTCTTTATTTTGTTTTTTAAACTATAAAAGTTGGAATTGTGGATTCAAATATGAACAACATGGATTGAAAGTTTTGTCATAACAAAAGTGATATTTTTATTCAAGCGAAGCACTCATTGTGATGTCTTTGGGGCTCGAACATAGGACCTCTAAAACATTTGTCTGTAATGACATACCTTTAACCACTTGAACTAAAAATCCTTGATGTACTTAGTATCACAAAGGATTTGAATTACACATACTGACATAGTACCCCATATATACTGCATACAAAATCTCTAGTCATCTTCAGCAAGTGTACTTGTTATGATATAATTCGTCCAGTATATGCGTTCATGGGCTTCCCATTAACAATACATTTTTCATTTGTTGCAGGAATTTAAAACAGAGATGAAATTCACATCAAAGTATTCTGCCAATGAAATTACAAGCAAGATTGAGGAGGCTGCAAAGCCACTTGGCTTTGATATTCAAAAGAAAAAGTACAAGGTAGGAAATACGCCTTAAACTTTATAAGATGATACACACACATATTTGATACATTGTTGCCTGCTGTATTGCTGACTTACCATTTCTTTTTCTTGGTAGATGAGACTGCAAAATTCTACTGAAGGGAGGAAAGGAAATCTTAATGTTGCAACTGAGGTATGCACAGAACCTTTTTCTTTTTTTTTTCAAAATATGAACACAAACAAATTTGAATGTGTGAACAGTTCTTACTACAGATTCAAATTTACTTCTGAACTACAAAGATAATACATCATATAATACATCATTTTATGAACTACAACCTTTTTTGAAACATGCAGATACGTCAAGTGGCACCTTCTTTCCATATGGTTGAGCTTAAGAAATCTAAGGGAGACACCCTAGAGTTCCAAAATGTATTGTTGCTAATTCTTTTAGCCAAATCTGTATACTTCATTTCAACAGTAATACATATGGTTCATTGACTGACCTTATAAATTATTATTTTGCAGTTTTACCAGAAGCTATCGGCTGGCCTGAAGGATGTAGTGTGGAAAACCGAGGATGAAATGGAAGCTCATTTTCATGAAAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273168.1	3.1e-183	CBL-interacting protein kinase 32-like isoform X2
Swissprot	Q2QY53.2	1.2e-171	OsCIPK32
trEMBL	A0A8B7BWG8	1.2e-176	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G26980.4	67.22	9e-170	593	CIPK3;SnRK3.17	CBL-interacting protein kinase 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g442725	AT2G26980.4	424	122	3	7	414	18	440	67.22	9e-170	593
g442725	AT2G26980.3	424	122	3	7	414	8	430	67.22	1e-169	592
g442725	AT5G21326.1	432	137	3	1	416	1	431	64.35	7e-165	577

Ortholog group

Species	Genes
Allium cepa	g112774.t1; g121045.t1; g14302.t1; g14311.t1; g236403.t1; g243128.t1; g39848.t1; g442725.t1; g521711.t1
Allium fistulosum	AfisC3G05085; AfisC3G08631; AfisC4G03056; AfisC4G04950; AfisC6G06429; AfisC7G04271; AfisC8G04181
Allium sativum	Asa0G01202.1; Asa0G03127.1; Asa1G01436.1; Asa2G07154.1; Asa2G07156.1; Asa3G01577.1; Asa3G02620.1; Asa4G00781.1; Asa8G00377.1; Asa8G00383.1
Arabidopsis thaliana	AT1G01140.1; AT1G01140.2; AT1G01140.3; AT1G30270.1; AT2G26980.1; AT2G26980.2; AT2G26980.3; AT2G26980.4; AT2G26980.5; AT4G24400.1; AT4G24400.2; AT5G21326.1; AT5G35410.1
Oryza sativa	LOC_Os01g35184.1; LOC_Os01g35184.2; LOC_Os03g03510.1; LOC_Os03g03510.2; LOC_Os03g20380.1; LOC_Os03g20380.2; LOC_Os03g20380.3; LOC_Os03g20380.4; LOC_Os03g20380.5; LOC_Os03g20380.6; LOC_Os03g20380.7; LOC_Os03g20380.8; LOC_Os06g40370.1; LOC_Os07g05620.1; LOC_Os07g05620.2; LOC_Os07g48760.1; LOC_Os11g03970.1; LOC_Os11g03970.2; LOC_Os12g03810.1; LOC_Os12g03810.2; LOC_Os12g03810.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	36	253	208.2	1.3e-61
PF03822.11	NAF	Domain	292	352	72.7	1.8e-20

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0005829	C	cytosol
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07198	PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit	EC:2.7.11.11	Apelin signaling pathway	ko04371
			FoxO signaling pathway	ko04068
			PI3K-Akt signaling pathway	ko04151
			AMPK signaling pathway	ko04152
			mTOR signaling pathway	ko04150
			Autophagy - animal	ko04140
			Tight junction	ko04530
			Insulin signaling pathway	ko04910
			Glucagon signaling pathway	ko04922
			Adipocytokine signaling pathway	ko04920
			Oxytocin signaling pathway	ko04921
			Axon regeneration	ko04361
			Longevity regulating pathway	ko04211
			Longevity regulating pathway - multiple species	ko04213
			Circadian rhythm	ko04710
			Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network