result

Gene information

Detail information of g443844


Location
GeneChrStartEndStrand
g443844Scaffold_81711:HRSCAF_464797216148216537+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrKAF7067253.11.0e-28hypothetical protein CFC21_073165
SwissprotP40619.11.3e-25HMG1/2-like protein
trEMBLA0A3B6LS057.3e-29HMG box domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G20696.357.355e-32 132HMGB3;NFD03;NFD3high mobility group B3

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag141451.t1; g388143.t1; g443843.t1; g443844.t1; g484579.t1; g512347.t1; g512353.t1; g512355.t1; g512359.t1; g523931.t1; g91554.t1
Allium fistulosumAfisC2G06767; AfisC3G03099; AfisC3G06694; AfisC3G06698; AfisC4G00939; AfisC4G01521; AfisC5G02801; AfisC5G06232; AfisC6G03994; AfisC7G03844; AfisC7G05575
Allium sativumAsa2G03851.1; Asa2G05210.1; Asa2G05211.1; Asa2G05212.1; Asa3G02102.1; Asa6G00540.1
Arabidopsis thalianaAT1G20693.1; AT1G20693.2; AT1G20693.3; AT2G17560.1; AT2G17560.2; AT2G17560.3; AT4G35570.1
Oryza sativaLOC_Os09g37910.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00505.16HMG_boxDomain3110078.53.5e-22

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006333Pchromatin assembly or disassembly
GO:0005198Fstructural molecule activity
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006996Porganelle organization
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0016043Pcellular component organization
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0030527Fstructural constituent of chromatin
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K10802HMGB1; high mobility group protein B1EC:- Base excision repairko03410
Autophagy - animalko04140
Necroptosisko04217
K11295HMGB2; high mobility group protein B2EC:- --
K11296HMGB3; high mobility group protein B3EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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