result

Gene information

Detail information of g443925

Location

Gene	Chr	Start	End	Strand
g443925	Scaffold_81727:HRSCAF_464813	81789	83967	-

Sequences

CDS

Protein

Gene

>g443925.t1
ATGGAAGCAAAAGGATCTTCTTCTTCATCATCGTTATTCAATGCAAGATGGAATCCTACTAAGGAGCAAATTGCAATTCTTGAAGCTCTTTATAGTCAGGGACTTAGAACTCCAACTTCTGAGCAAATTCAACAAATTACCATCAAGCTTAGGGAGTTTGGTACATATATATTTCTACAACTGACAAAATTTGTTTCATTTTTTTCACTTTCTACTGAAAATTTTGAAATTATACCCATTTAATATATACTTTTGTAGGTATGACGGAGGGAAAGAATGTGTTCTACTGGTTCCAGAATCATAAGGCAAGACAGAGGCAAAAACTAAAGCAAGATAGGCTTGCTTATTATAGTAGGCTTTTTAGTCATGGAGTGGTTCCTCAATCTCATCAGTCTAGTAATGGTAGTTTTTCAATTTTGGATATTTATATTTTCATATTTATTAATTGAGTTTAGCGTATGAGGCCTATGTTAAGTTTAAACGAAAATCATATTTTAGTGTCATCTGCATGTAGAAATTTGGCCAAAGGGCAATTTGAATCATGAACTTTAATCAATGTGTTTGCTGAGTAGCTTATAATTGCACCACATAATTATAATGTGTTTTTATTTTGAAGCCCGTATCAATGAATGATTAATGTTTGAATTTGATTTTATTTATATTTGAAATTGCACGTTGACTAGGACATTAATATTACTATTAATTATGGTAAAAAATAGCAAAATGCCTAATTACAAAATATCATGATTAAACTTTAGAAGTACATCGGGAATGTCATGACTAACTGCGAGTATAATTAAATTGGCATCCAGGTCCTTTTTTTCTGAATTAAGTTGTAACTAGGGTTTTGTTTTACAGAAAATGATAGGTTTTGTGAAGAAGTCTAGATAACCGCTTAATCAGTCATTGATTGTATCTGATTTTAAGGTATAAGTGTACATTTTTAATTTCCAAATAATTTTCATCCATTTTGTTTTTAAAAAGATTATCAGAAAAATTATTTGTTGTTTTTGTGGATTTTTGTTTTCCGATTAAGACAATATTTTGAGATTCATTGTTGCACATTCAAATCAATTTAAGAATTTGAATGGAAACGAAATCTGATTGTGAGGTTAGAAGCTCCAATCAAAGAGTACAGTTTGTCCTGTAAATTTTGTAACCTGCCACCTCGTTCAGTTTTGAAATGCAATTTTTTGTGTTTGATAATTTTATGATCTGATATTTGAGTTCAATAGTATACATGTATTTTCCCGACTAGCTAAATTTACAAACTCTTCCTTTCTGACCAAAACTTTTCATTACAACTTCATTTTGTTTTCAAATATAAATTGTGATTAAAATAAAAAAGAGTGGTCAACATCCAGAAGTGGGATTGGCTAAATAGGTTGCATAGTGGTGGAAATATTGATTGCATCAGTGTTCCATTTTGTTGCTTTCTTGAATTTCTGTGCAAAATCTTTGTGATCTTTTGCTTACTCCATCATATAATAAACACTTTTGATTCTCCCAATTCCTTTTTTAAATGCATAATCCTCTCTCATGTGATACCTCTCTATATGTGTATATACTATATACATGCGTATCATATCTAGCTAGCTAGGTCTTATTGGTTGATTTCCAAAGTCCAATCATTTTCCACTATTTTCTGAACTCAACATTGTCTTCCCAAATCTCATTACCTTTTTGCACTTTTCTGCTATTTTATTCACACTTCTTTTTGAGTTTTGACTTGTCACGCATTCAAATGTACGTAGTACATTGAATATTGATCTTATGTTATTTTCTTTTCACAGGTATATCTGGGCCTTACTTACCATCGATCCAGGTAGGAGGAGTTGGGCCACTAGGTTGTTATCCAAACATGTACATGGCCCAAGTACCCATGCAAATGAATCCAGTCCAACAAGAACAATTTCAAGCAATGGACTTCAACTGTGCTAAGAAAATCCAAGAAAACAGCTGCAACGTAGTAAACTCAGACAACCTTTTGACTGATATTGAAACTCTACAACTCTTTCCACTGCACCCAACTGGAATTCTAGAGGCTGAGAAATCTGGAAGCTCTCTCACTTCTGCTTCTGTTGATCATTCTGATCATGAATGGATAAAAGACTGTGAAAGAGAAGAACAGTGTGAGAATTTAGTAAACAATCCGCCTTACTTTAATTTCTTTGGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020243683.1	1.7e-42	WUSCHEL-related homeobox 4-like
Swissprot	A2WWU7.1	1.3e-23	OsWOX5
trEMBL	A0A6I9RA05	4.4e-37	WUSCHEL-related homeobox 5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G59340.1	55.26	2e-28	122	WOX2	WUSCHEL related homeobox 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g443925	AT5G59340.1	114	36	3	5	118	8	106	55.26	2e-28	122
g443925	AT1G46480.1	177	88	3	15	182	89	250	36.72	1e-24	110
g443925	AT3G18010.1	67	26	0	12	78	72	138	61.19	1e-21	100

Ortholog group

Species	Genes
Allium cepa	g316627.t1; g443925.t1
Allium fistulosum	AfisC6G01138
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os01g62310.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	15	74	61.3	5.3e-17

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0000578	P	embryonic axis specification
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009790	P	embryo development
GO:0009880	P	embryonic pattern specification
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0008284	P	positive regulation of cell proliferation
GO:0009628	P	response to abiotic stimulus
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009798	P	axis specification
GO:0009889	P	regulation of biosynthetic process
GO:0009942	P	longitudinal axis specification
GO:0009987	P	cellular process
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010654	P	apical cell fate commitment
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042127	P	regulation of cell proliferation
GO:0045165	P	cell fate commitment
GO:0048316	P	seed development
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048825	P	cotyledon development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0048859	P	formation of anatomical boundary
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0080167	P	response to karrikin
GO:0090451	P	cotyledon boundary formation
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090691
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network