result

Gene information

Detail information of g444744


Location
GeneChrStartEndStrand
g444744Scaffold_81812:HRSCAF_464898101640105853+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010930028.15.6e-186elongator complex protein 3 isoform X1
SwissprotQ7X7L3.21.5e-183tRNA uridine(34) acetyltransferase
trEMBLA0A6I9RNT94.1e-186Elongator complex protein 3

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G50320.188.120.0 647AtELP3;EAST1;ELO3;ELP3;HAC8;HAG3radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag444744.t1
Allium fistulosumAfisC2G06980
Allium sativumAsa6G04192.1
Arabidopsis thalianaAT5G50320.1
Oryza sativaLOC_Os04g40840.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF04055.18Radical_SAMDomain22041463.13.5e-17
PF16199.2Radical_SAM_CFamily42645335.85.7e-09

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0000791Ceuchromatin
GO:0008152Pmetabolic process
GO:0002097PtRNA wobble base modification
GO:0002098PtRNA wobble uridine modification
GO:0003674Fmolecular_function
GO:0003824Fcatalytic activity
GO:0004402Fhistone acetyltransferase activity
GO:0005829Ccytosol
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005694Cchromosome
GO:0005719Cnuclear euchromatin
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006396PRNA processing
GO:0006399PtRNA metabolic process
GO:0006400PtRNA modification
GO:0006464Pcellular protein modification process
GO:0006473Pprotein acetylation
GO:0006475Pinternal protein amino acid acetylation
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0040007Pgrowth
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0007389Ppattern specification process
GO:0008033PtRNA processing
GO:0008080FN-acetyltransferase activity
GO:0008150Pbiological_process
GO:0008283Pcell proliferation
GO:0009292Pgenetic transfer
GO:0009294PDNA mediated transformation
GO:0009451PRNA modification
GO:0009798Paxis specification
GO:0009889Pregulation of biosynthetic process
GO:0009966Pregulation of signal transduction
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010646Pregulation of cell communication
GO:0010928Pregulation of auxin mediated signaling pathway
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0016407Facetyltransferase activity
GO:0016410FN-acyltransferase activity
GO:0016569Pcovalent chromatin modification
GO:0016573Phistone acetylation
GO:0016740Ftransferase activity
GO:0016746Ftransferase activity, transferring acyl groups
GO:0016747Ftransferase activity, transferring acyl groups other than amino-acyl groups
GO:0018193Ppeptidyl-amino acid modification
GO:0018205Ppeptidyl-lysine modification
GO:0018393Pinternal peptidyl-lysine acetylation
GO:0018394Ppeptidyl-lysine acetylation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0022603Pregulation of anatomical structure morphogenesis
GO:0023051Pregulation of signaling
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032991Cmacromolecular complex
GO:0033588CElongator holoenzyme complex
GO:0034212Fpeptide N-acetyltransferase activity
GO:0034470PncRNA processing
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034660PncRNA metabolic process
GO:0035265Porgan growth
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0043543Pprotein acylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044444Ccytoplasmic part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0044764Pmulti-organism cellular process
GO:0046483Pheterocycle metabolic process
GO:0048583Pregulation of response to stimulus
GO:0048589Pdevelopmental growth
GO:0048731Psystem development
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061733Fpeptide-lysine-N-acetyltransferase activity
GO:0065001Pspecification of axis polarity
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0099402Pplant organ development
GO:1900618Pregulation of shoot system morphogenesis
GO:1901360Porganic cyclic compound metabolic process
GO:1901371Pregulation of leaf morphogenesis
GO:1901564Porganonitrogen compound metabolic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000024Pregulation of leaf development
GO:2000025Pregulation of leaf formation
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090708
GO:1905392
GO:1905421
GO:1905428

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K07739ELP3, KAT9; elongator complex protein 3EC:2.3.1.48 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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