result

Gene information

Detail information of g445864

Location

Gene	Chr	Start	End	Strand
g445864	Scaffold_81904:HRSCAF_464990	96229	98082	-

Sequences

CDS

Protein

Gene

>g445864.t1
ATGTGTACAAGAGGGCATTGGAGGCCATCGGAAGATGAGCAATTAAAGGAATTAGTTGCTCAGTTTGGTCCGCATAACTGGAATGCTATCGCTGAAAAACTTCATGGGAGATCAGGTTCAATTTTACTAGAGTTTTCCTTTTCTAAGTTGTTCTATGTTTTTCATGCTTATTTCTTGAGATTATCGTGATCATGTGCTAGGTATCTTGTTTTTGTGCAATTATAAAATTAGGTGCCGAGCAAACCATCTTGAAAAAAGAATCACATCATTTGTGCTATATTGTTACATAAATCATGCACATATTTTTTGGCAAAATAATTCTTCATTCTTGAATCTGTAATTGTGCAAGTTTTTTTTGTTGCAAGTTCATAACGTTTTATTTTACAGTATTCTGGATTAAATGTTTGTTATTTTCAAATTTTAAGCTTGTATATTGGCCATGTATCATTTCTACTATGATAATTAAAATTTAGTGCAAAACAAGTCATCTTTGAAGAATTAACATCTTTGTTGATGCTAAAATATTATAGGGGTCATACACATATTTCCAACAGAAAATCTTCACACACACATATATATTTCTATTTGGACACAAGTTGGTGACACTGTGGATTTCAACTATTGGATTGTCCATCCTAGTTGCAATCGTAAATTCCACAAATTTCAACAACTACTAATCTATTTCCTAATTATCCATTTTTGGACAATATCAGACTTATCTAGATTTTAATAATTCAAAGATGATTATTGATATATTTCTTTAATAAAACAGGAAAAAGTTGTAGATTGAGATGGTACAATCAACTAGACCCAAGAATAAATAGAAGCCCATTTACTGAAGAGGAAGAAGAAAAGCTCTTGGCATTGCATCGGGTACATGGAAATCGATGGTCGATCATCGCAAGACTGTTTCCAGGCCGGACAGACAACGCCGTCAAAAATCATTGGCACGTGATAATGGCCAGAAAATGCAGAGAAAGATCCAGATTTCAAGGAAGATCAAGATTGTCTCACTCTGAAGAATTACAATCGAGACAACGGTTCCATGAGAGAAATTTGTCGCTACAAGAGTTTCATCTGCAGAATAAAGAACTTATAACAGGTATAGTGCAGTTATATTTTATTTAACTAGCTGTATGTTCAGTTTGCGATATAGTAAAAGCAGACAAATTTTTAGATTGATTTTGATTGTTTACTATCAGCAGGAAAAAAATGTGACTTATGTAAGTATGTGTAGATTATAATTTGTTTTCAAAAACTCAGATACTAAAACTTATCTTAGTACACACTTGGAAAGTATGCACTGATATGTACGTGTGTGTATGTGTGCATACACTCGTGCACATACATACATATACGCATGCGTGCACGCATGCACTTGCATGTAGATGTATGTCTGTATGTGTGTGATTAGAAAAAATGGCATCATGTTGTTTAGCTACACAATCAACCACCTTACAATATTTACCACAGTTGTCAGATTTGCAGACGAGCAAAGTTAATAGAAACTTTAATTTCACATCCAAAGATTTTGATATACGATATTTTCCATCAATAGTTTACACATATGCATTGCATGTATAAAAGAACGACGTTAAATAACATATATCTATTTGTACTATAATATATATATATATATATATATATATATATATATATATATATATATATAATATCATATATCTGTTAATTATTGCAGATAGCGGAGATAGTGAAAACAAGATAGAGTTTTATGATTTTCTTCAAGTGAATAATGAATCCGGTGCTTCTGGAATAGAGGAAGATCAGATGGAAGAGCTAAGGCAAGGAGTTCCTTTTATCGACTTTTTGGGTATTACAGAAGGAAAAATATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255197.1	1.4e-69	transcription factor MYB52-like
Swissprot	Q6R0C4.1	1.0e-56	Protein ABA-HYPERSENSITIVE 1
trEMBL	A0A5P1F9K7	1.0e-69	Transcription factor MYB52-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G17950.1	50.63	3e-58	221	ATMYB52;BW52;MYB52	myb domain protein 52

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g445864	AT1G17950.1	239	73	6	1	194	2	240	50.63	3e-58	221
g445864	AT1G73410.1	236	72	4	1	194	3	238	51.69	2e-56	215
g445864	AT1G69560.1	227	80	4	3	194	106	327	47.14	2e-49	191

Ortholog group

Species	Genes
Allium cepa	g445864.t1
Allium fistulosum	AfisC3G05707; AfisC7G00110
Allium sativum	Asa2G04686.1
Arabidopsis thaliana	AT1G17950.1; AT1G73410.1
Oryza sativa	LOC_Os03g51110.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	4	50	62.5	2.7e-17
PF00249.28	Myb_DNA-binding	Domain	56	98	55.9	3e-15

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0001101	P	response to acid chemical
GO:0001134	F	transcription factor activity, transcription factor recruiting
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009414	P	response to water deprivation
GO:0009415	P	response to water
GO:0009628	P	response to abiotic stimulus
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009832	P	plant-type cell wall biogenesis
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0042546	P	cell wall biogenesis
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044085	P	cellular component biogenesis
GO:0044087	P	regulation of cellular component biogenesis
GO:0044089	P	positive regulation of cellular component biogenesis
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048523	P	negative regulation of cellular process
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071554	P	cell wall organization or biogenesis
GO:0071669	P	plant-type cell wall organization or biogenesis
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0097305	P	response to alcohol
GO:1901347	P	negative regulation of secondary cell wall biogenesis
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1902074	P	response to salt
GO:1903338	P	regulation of cell wall organization or biogenesis
GO:1903339	P	negative regulation of cell wall organization or biogenesis
GO:1903340	P	positive regulation of cell wall organization or biogenesis
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network