Detail information of g449603


Location
GeneChrStartEndStrand
g449603CHR7210725402210740366+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020258162.13.2e-253lysine-specific histone demethylase 1 homolog 1-like
SwissprotQ6Z690.16.4e-222Protein LSD1-LIKE 1
trEMBLA0A8K0ISS11.3e-232Lysine-specific histone demethylase 1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G62830.164.850.0 767ATLSD1;ATSWP1;LDL1;LSD1;SWP1LSD1-like 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag449603.t1
Allium fistulosumAfisC7G02194
Allium sativumAsa3G03112.1
Arabidopsis thalianaAT1G62830.1
Oryza sativaLOC_Os02g51880.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF04433.14SWIRMDomain29236947.91.1e-12
PF01593.21Amino_oxidaseDomain394826302.85.1e-90

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006464Pcellular protein modification process
GO:0006476Pprotein deacetylation
GO:0006479Pprotein methylation
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0008213Pprotein alkylation
GO:0009987Pcellular process
GO:0016043Pcellular component organization
GO:0016569Pcovalent chromatin modification
GO:0016571Phistone methylation
GO:0016575Phistone deacetylation
GO:0018022Ppeptidyl-lysine methylation
GO:0018193Ppeptidyl-amino acid modification
GO:0018205Ppeptidyl-lysine modification
GO:0019538Pprotein metabolic process
GO:0022622Proot system development
GO:0032259Pmethylation
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0034968Phistone lysine methylation
GO:0035601Pprotein deacylation
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0043414Pmacromolecule methylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048364Proot development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0051568Phistone H3-K4 methylation
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0098732Pmacromolecule deacylation
GO:0099402Pplant organ development
GO:1901564Porganonitrogen compound metabolic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11450KDM1A, AOF2, LSD1; [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylaseEC:1.14.99.66 Thermogenesisko04714

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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