Detail information of g45175


Location
GeneChrStartEndStrand
g45175Scaffold_27299:HRSCAF_238580355845363886-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrRWR94037.16.3e-76homeobox protein knotted-1-like protein 2 isoform X2
SwissprotQ84JS6.14.2e-69Protein KNAT6
trEMBLA0A835IW597.0e-77Homeobox protein knotted-1-like 6

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G23380.155.698e-70 260KNAT6;KNAT6L;KNAT6SKNOTTED1-like homeobox gene 6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag45175.t1
Allium fistulosumAfisC3G08682
Allium sativumAsa2G07204.1; Asa2G07205.1
Arabidopsis thalianaAT1G23380.1; AT1G23380.2; AT1G70510.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03790.10KNOX1Family7011065.52.3e-18
PF03791.10KNOX2Family12016579.68.7e-23
PF05920.8Homeobox_KNFamily21925863.79.2e-18

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003002Pregionalization
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0007389Ppattern specification process
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009735Presponse to cytokinin
GO:0009736Pcytokinin-activated signaling pathway
GO:0009755Phormone-mediated signaling pathway
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009908Pflower development
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010073Pmeristem maintenance
GO:0010093Pspecification of floral organ identity
GO:0010094Pspecification of carpel identity
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0048646Panatomical structure formation involved in morphogenesis
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032870Pcellular response to hormone stimulus
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048367Pshoot system development
GO:0048437Pfloral organ development
GO:0048438Pfloral whorl development
GO:0048440Pcarpel development
GO:0048444Pfloral organ morphogenesis
GO:0048445Pcarpel morphogenesis
GO:0048449Pfloral organ formation
GO:0048462Pcarpel formation
GO:0048467Pgynoecium development
GO:0048507Pmeristem development
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0071310Pcellular response to organic substance
GO:0071368Pcellular response to cytokinin stimulus
GO:0071495Pcellular response to endogenous stimulus
GO:0080090Pregulation of primary metabolic process
GO:0090567Preproductive shoot system development
GO:0099402Pplant organ development
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0090701
GO:0140110
GO:1905392
GO:1905393

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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