result

Gene information

Detail information of g454822

Location

Gene	Chr	Start	End	Strand
g454822	Scaffold_82822:HRSCAF_465908	95936	100718	+

Sequences

CDS

>g454822.t1
ATGGTCTCTGTTAGGGTTGGGAATGAGAACCAATTCCTGCAAAATAGATTCGAAACAAAGGGGCAACATCCAAACCCAATAAAAGCGGAAAAAATGTTTCTTCCCAAATCAATATTTTCACTCAACTCCTCCGCTTCCTCGAAATTTCCATCCACTCCCGCTTCTTGCCGCGTCCAACCGCAAAACGACGATATTGACGAGGTTACGACCGACGACCGGTGGTCCTCCATGCTACCTGAACTTCTCGGCGAGATTATCCGCCGCGTTGAGAAAAGCGAGGACACGTGGCCGATTCGCAAGAGCGTCGTTTCGTGCGCCTGCGTTTGCCGCCGGTGGCGCCGGATCACTACCGAAATCGTTGGCTCGATTAGAGATACTGGATTGATTACTTTTCCTTCTTCCCTTAAACAAGCCGGACCTAAAGAGCTTCCAATACAATGTTTTATCAAGAGGAACAAGAAGAATGCGACGTTCTATTTGTACCTCAGCTTGACCCAATTATTTATGGATAAAGGAAAGTTTCTAATGGCTGCTCGAAGAGTTAGGCATGGTGCCCATATCGAATACGTCATCTCCCTAGATGCCGATAACATATCACAAGGAAGTAGTGCATATTTGGGAAAATTGAGATCCGATTTCTTGGGAACAAAGTTTACAATGTTTGACACTCGTGCTCCTCACACCAATGCAAAATCTTCAGGCATTAGGAAAAGCTGCCATTTCACCAACAATCAAATTAGCCCACAACTCTCAATTGGAAACTTTGAAATAGGTCACATCTCCTACAAGTTTAATCTTCTTAAATCAAGAGGTCCTAGAAGGATGATATGCAAAATGCAGCCTCCGCCGTCAGAAGAAGAAAACAGAAAAGAAGAAAGCGAAAAGGAAGAGAACAAAAGTGAAGAAAAACCCTACAAAGAAAATATGGTGTTGTGGAATAAAGTACCAAGGTGGCACGAACATCTTCAATGCTGGTGCTTGAATTTTCATGGAAGAGTCACGATTGCTTCAGTTAAAAACTTTCAACTAACGGGGGAGGCTGGAGGTGATGACTCTGTTTTGCTGCAGTTTGGAAAAGTTGGAGATGAATTGTTTACTATGGACTATAGGGAACCACTTTCTGCTTTTCAAGCATTTGCCATTTGCCTAAGTAGTTTTGGCACAAAATTTGCTTGTGAATAG

Protein

Gene

>g454822.t1
ATGGTCTCTGTTAGGGTTGGGAATGAGAACCAATTCCTGCAAAATAGATTCGAAACAAAGGGGCAACATCCAAACCCAATGTACCTTATGTCAAGTACTTATGGCTAAAATATCATAAAAGTCAGGCAAAATCCAAATGGATTTGACTTGACGAAAGGGCATCAAGCATACACATCCACCAACGTTTTTGTGCGATCGGGTTTAAGTTTCCAAGTGTGATTTACTCTGATAAAGCCCAACTTGAACTGGAGATCCGCCGTGGTCCAGCACAGCAAAAATTTTAAGTCCAAAATATTCGTAGTTTCGCTTATACAGCAGTGAGAACTGAGATTTGATGACCTTTCTAATTCTGAAAATTAAGCGACATGTCTGAAAAATAAAGATGATTACGTAAGCAATCAGTCTCCATTTATAATACGCGCTAATTTATCTATGTTTTATATTTTTATTATCCCCGTCCCTTCATTCAGAGTCTCAGACAAAACTGAAAAAGAAAAGCGGAAAAAATGTTTCTTCCCAAATCAATATTTTCACTCAACTCCTCCGCTTCCTCGAAATTTCCATCCACTCCCGCTTCTTGCCGCGTCCAACCGCAAAACGACGATATTGACGAGGTTACGACCGACGACCGGTGGTCCTCCATGCTACCTGAACTTCTCGGCGAGATTATCCGCCGCGTTGAGAAAAGCGAGGACACGTGGCCGATTCGCAAGAGCGTCGTTTCGTGCGCCTGCGTTTGCCGCCGGTGGCGCCGGATCACTACCGAAATCGTTGGCTCGATTAGAGATACTGGATTGATTACTTTTCCTTCTTCCCTTAAACAAGTACAGATTATTTTTTATTTGTTATTTTTAGATATTTTCGAGGTTGAATTAGATCTGTTATGTCGTTAGATTTTACGATTGCTTTGTGGGATATCAGTTGCGGTTGTTTTTTAAAAGGAATAATACTTTTTGACTTGAAAACGTGTAAATGTTGTAGATCTATTATGTTCTAAGATCATTTTTCCCAATCCGTGCCTTGCCTTTTATTTTGGAAGTACTTCATTTAATGTTGGAGAAGCAATTAAATCGGATGTAAACAACTCACGATCCATTTTATTTATTTTCAAAAAATGAAATGATATAGTATGCAATAACATATGTTTTTGATGTTGAATGCAGGCCGGACCTAAAGAGCTTCCAATACAATGTTTTATCAAGAGGAACAAGAAGAATGCGACGTTCTATTTGTACCTCAGCTTGACCCAATGTGAGATTATATTCTTGGACAAATCTATATAATACACATTTAATGGTCAGCTTTTAGATATTTAGCTATAATAATTTTATATGAGTGATATAGATAGTTCTTTTTTTATTTTATTTTTGCTTACAGTTGTTGGAATTGAAGTAAGCAGACAACCATGACTATGTTTTTTGATATTTATAATTGAGTTTGTTTAGTTTTTTACTACAAACTTTTTTTTTGGAATTGTCAAAGTGAAAACCATATTATTGTATTGTATAAGGGAACCACTGAAATTGTGTTCTAAGATAAAAATTGATTCGATAAGGGGATTGAACAAAATATTGGATAAGGGGAACCATTGAAAAACAGACCTTTGAAAAAACAATAACATTAATTTTAATTTTTTTTTTTGGGTTAAATTCTAGAAGATTTCAATTATTAACTTAAAGTTTAATTATGTTTGAAATATCTTATTTTTGAACCTAAAAATTACAAAAAAAAAACAATTTGATTTGCTATACTTCAAATTTTAAAACTAAGATTTTTTTTCCTTGAAACTTTTGTTTTGATTTTTTTTCCTTGTAAATTTCAAGTTATCATTTTCCACCAAATTATTAAAGGAGAATGTTATAAGGATATTTTGATTAATAATTGTTATAAAAATAAACATAACCACTTTATCATTTTCCCCTTACCAGAAAATCATATCTTCAAAAGTTTTACTTAGCCAATCATACCCCTAATCAAATTTGCTTCTCCTTGTAACAACCACCTTTTTTTGGTTTGATAAAAACGTGAAGAAATAGTCATATGCTATGATCATCAGACTTGATTATAAACAACCATGATCATTAGAATTAGAATTTGATAAATTTTCCAGGCGTGATCCATGGACAACATCTCTCCTCGTAGTTCTATACTAGCAAGCAACAATTCTAGCAATAAGCTAATGTAAAATTACAAAGATCATTCCACATAGTTCCATCCTACAACCTGTATGTATAAAGTATAAATCATCAATAGAGAACATAAATTTGGTTTTTATGCTAGCGGTACAATATATAGGATTTGGATTCGGATGATATTCGGCAATTATAATGTTAACTGTCTAGTTCTCCCCCCTTCTTCTTTCGGCAACTGTTTTTCAAGTTATTTCTCCCCAATGTGTTATTGTTTGCTCTACTCCATTAGATTCAAACTTTATCATATAAAAGTTGCAATAATTAGGGTATTTAAAGCTACTCTTTTGGCTGAAGCATCTTCTGTTACATGGATCTATTTTTGTTCTTATGATTTATATTACGTTATTTAGTGCATAAATTTTTATATTTGGCAGACCATGTCATTTGGCTTGAATAGTCTATTCGTGTAATCTTGTCAATATAAAAACTTTTGATTTTCTTATTGTTAATTTTAGTAGGATAGAAAGGCGCTGGAAATTGTTATATATGTAGTATATCAAAACACATCTTCATGTTAGCACATAATGGCAATCACCGAAGCAGTTTGAGTCCATTGAATGACTAAACAAAAAAAAGATTGATCAGCAAAATTAGAATTGAATGCTTATATGGGAGGTTTGAAATTTGAAGGGGAAATGGACCTTTGTAGGACATGATTCTGTGTCCTGGATGTTGGCAAAGAAATGAGTCGTCTGCGAAATTGTTTATCTTTATTTGTTTGATATTGACTGGGTGATATATTAGAGCTCCTTGGGTGTTATAGTAATGTTGTCCACAGTGATGATAATGATATATGCTTTATGAATCGAAGAATTATGTTATGCTGTGCTTGTCCGGAATATAGCTTGGTGGATGACAATGTCATGCTGATTAAAGTCAACATTACATTATATGATTAAACATACTGCTAAATACACTTGTATATTTTTTTACTGTCTAGCTGTTTAGTATTACAAGCTAGGCATAATTGCTAACGAATCTGAGCTTTCTGATTCATTTGAATGGAAAATGTTTAAGATGAAGATGGTTTCATTACAAACATCTTTTGTCCAATTAATGGGTTGCATTTCATTGATTTAAACTAAAGCAGTAAACTTTTAACTTTTTATTCCACTTCGATACCAAGCCATGTTACAAGCTATAAATACGTTCATGCGTTTGTGTTTGTGGTGAGAAAAGACTGCAGAGTGATATAATTGTATTCTCGTCTGTTGACAAAAGTGCATAAATTCTTATATATTTTTATTTATTTTTAAAGCAGTATTTATGGATAAAGGAAAGTTTCTAATGGCTGCTCGAAGAGTTAGGCATGGTGCCCATATCGAATACGTCATCTCCCTAGATGCCGATAACATATCACAAGGAAGTAGTGCATATTTGGGAAAATTGAGGTAATGCTTGTGCATTCGCTATAGATATAAAGAACAAGAAAAGTCAGTTAACATAATCACCAACCATCATGCATATGGTGGTTTCCTTTAAACGTATTAATTGTAGTTCAAATTTCTTGTATGAACTGTTTCATGAGACAATCACTCCGTAAGTTTATATTTAATACCTGTCAGATGGAGATCTCCAGAATAATATTGTCTTACATGAATGATTTATGTTTGAGTGTTAGTGTTCATGAGTGTCTTTTATTTTTGGAGTTTGTCCCATAGGTTTTCCGTTGCCTTTAAATGGGTTTTCAATTGATTTAGTGTCCCATTTTGAATTTTTTTCCTCCAAAACTAGAATTCAATCATGTAAATATCATAAATTATTGGCACGTTTTAATGCAATCACCTAAACGACTATGCTGCGGAGGAAATTTTCTTCTATTAATGATTAAACATGCAATGCAAAGTAGCAAATTGACTCATTTTTCTGATGTATAAGAAATAGAACTCCTGATATTTGGTTTTGTAAAAATAGCCATAACCTCGAGCACAAGTTATTTCTGCCTCTCACCCCTTACGTGAACAGTATCAACCTCTTTTTTCCCTCCTTCTTTCCTTTCTTTTGCATAACATCATCTAAAATTTTCACGCATTAGCAGATCCGATTTCTTGGGAACAAAGTTTACAATGTTTGACACTCGTGCTCCTCACACCAATGCAAAATCTTCAGGCATTAGGAAAAGCTGCCATTTCACCAACAATCAAATTAGCCCACAACTCTCAATTGGAAACTTTGAAATAGGTCACATCTCCTACAAGTTTAATCTTCTTAAATCAAGAGGTCCTAGAAGGATGATATGCAAAATGCAGCCTCCGCCGTCAGAAGAAGAAAACAGAAAAGAAGAAAGCGAAAAGGAAGAGAACAAAAGTGAAGAAAAACCCTACAAAGAAAATATGGTGTTGTGGAATAAAGTACCAAGGTGGCACGAACATCTTCAATGCTGGTGCTTGAATTTTCATGGAAGAGTCACGATTGCTTCAGTTAAAAACTTTCAACTAACGGGGGAGGCTGGAGGTGATGACTCTGTTTTGCTGCAGTTTGGAAAAGTTGGAGATGAATTGTTTACTATGGACTATAGGGAACCACTTTCTGCTTTTCAAGCATTTGCCATTTGCCTAAGTAGTTTTGGCACAAAATTTGCTTGTGAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245865.1	1.9e-134	tubby-like F-box protein 1 isoform X1
Swissprot	Q5QM27.1	3.9e-113	Tubby-like F-box protein 9
trEMBL	A0A8K0HXY7	1.6e-132	Tubby-like F-box protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G53320.1	55.87	3e-118	422	AtTLP7;TLP7	tubby like protein 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g454822	AT1G53320.1	383	144	5	32	393	1	379	55.87	3e-118	422
g454822	AT2G47900.2	355	144	7	74	393	52	406	49.58	7e-93	337
g454822	AT2G47900.1	355	144	7	74	393	52	406	49.58	7e-93	337

Ortholog group

Species	Genes
Allium cepa	g454822.t1; g532575.t1
Allium fistulosum	AfisC2G04119; AfisC3G04589
Allium sativum	Asa2G03644.1
Arabidopsis thaliana	AT1G53320.1
Oryza sativa	LOC_Os01g48370.1; LOC_Os05g43850.1; LOC_Os05g48670.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00646.30	F-box	Domain	74	119	23.8	2.7e-05
PF01167.15	Tub	Domain	139	386	271.3	5.4e-81

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005543	F	phospholipid binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008289	F	lipid binding
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009620	P	response to fungus
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0035091	F	phosphatidylinositol binding
GO:0043167	F	ion binding
GO:0043168	F	anion binding
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0048229	P	gametophyte development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051704	P	multi-organism process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071944	C	cell periphery
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network