result

Gene information

Detail information of g456767


Location
GeneChrStartEndStrand
g456767Scaffold_83012:HRSCAF_466098126613127553-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrMBA0766522.12.3e-10hypothetical protein
SwissprotQ9FRH7.15.4e-12SKP1-interacting partner 26
trEMBLA0A2P5YLC21.7e-10Tubby-like F-box protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G76900.171.113e-1370.9AtTLP1;TLP1tubby like protein 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag133222.t1; g456767.t1
Allium fistulosumAfisC7G00993
Allium sativum
Arabidopsis thaliana
Oryza sativaLOC_Os12g06630.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01167.15TubDomain10214340.42.4e-10

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0016020Cmembrane
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005543Fphospholipid binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0008289Flipid binding
GO:0008150Pbiological_process
GO:0009536Cplastid
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0051707Presponse to other organism
GO:0009620Presponse to fungus
GO:0009889Pregulation of biosynthetic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0035091Fphosphatidylinositol binding
GO:0043167Fion binding
GO:0043168Fanion binding
GO:0043207Presponse to external biotic stimulus
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071944Ccell periphery
GO:0080090Pregulation of primary metabolic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K19600TULP1; tubby-related protein 1EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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