result

Gene information

Detail information of g457124


Location
GeneChrStartEndStrand
g457124CHR4230894660230928657+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_031484803.12.5e-66zinc finger matrin-type protein 2
SwissprotQ96NC0.15.1e-32Zinc finger matrin-type protein 2
trEMBLA0A804LB896.8e-66U1-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G05760.176.503e-71 264C2H2 and C2HC zinc fingers superfamily protein

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Ortholog group
SpeciesGenes
Allium cepag457124.t1
Allium fistulosumAfisC4G01251
Allium sativumAsa0G02725.1
Arabidopsis thalianaAT3G05760.1; AT3G05760.2
Oryza sativaLOC_Os03g61640.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF12171.5zf-C2H2_jazFamily8511028.31.4e-06

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000375PRNA splicing, via transesterification reactions
GO:0000377PRNA splicing, via transesterification reactions with bulged adenosine as nucleophile
GO:0000398PmRNA splicing, via spliceosome
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003723FRNA binding
GO:0030532Csmall nuclear ribonucleoprotein complex
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006396PRNA processing
GO:0006397PmRNA processing
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0008380PRNA splicing
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0016070PRNA metabolic process
GO:0016071PmRNA metabolic process
GO:0032991Cmacromolecular complex
GO:0034641Pcellular nitrogen compound metabolic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0046540CU4/U6 x U5 tri-snRNP complex
GO:0071704Porganic substance metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097525Cspliceosomal snRNP complex
GO:0097526Cspliceosomal tri-snRNP complex
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1990904Cribonucleoprotein complex
GO:0120114

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K12848SNU23; U4/U6.U5 tri-snRNP component SNU23EC:- Spliceosomeko03040

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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