result

Gene information

Detail information of g457546

Location

Gene	Chr	Start	End	Strand
g457546	Scaffold_83073:HRSCAF_466159	217760	221509	-

Sequences

CDS

Protein

Gene

>g457546.t1
ATGGATCTTAATGATTTTAATGCCATTGGAGTTGAGCTACTCAACTTAGAAAATACAAGCATAAACGAACCAGTTATTGGCATGGAGTTCGACTCTGATGAGGCTGCTAAAGAGTACTACATAGCTTATGCTGCACGTGTAGGCTTCGGTGTACGTATGAACAAGTCCCGTAGATCCCGAAAGGATGATACGGTAATTATGCGTAGGTTTGTCTGCACGCGGGAAGGATTCCACTCAAAAAGAGTAATCTACGATGACGGTAAAAAGAAAAGAAAGCGCGGGACCTCTAGGGAAGGTTGTATGGCCATGATCGAAGTGATCCGTAAAGATCATGGGAAATGGACAGTCACAAAGCTTGTCACAGAACATACACATATGGTTGCTTTGGCCGATCAGTTTCAAAAACCACAGACCGATAGACCTATATTTCATCACGGTGAGTCAAGTGAAGGGTTCGGTACTTTGAAAATTTATAATAGAGGGATAAGGAGCAATCCATTTGGAGAAGGAGGAGAGGCTCAAAGTCTTTTGGAATATCTTAAGAAAATGCAAGCGGAGAATCCTGCATTCTTTTATGCTATTCAAGTTGACAACAATAATTGTATGACAAATGTTTTCTGGGCAGATGCTAGAGCTAGAACAGCCTACCAAAGTTTTGGTGATTCTGTAATATTTGACACGACTTATAAAAAGACAAAATACATGATGCCTTTTGCAACTTTCAGAGGTGTAACTAATCATTTGCAGTCAGTCACGTTTGGCTGTGCTTTATTGATGGATGGAACCAAGGGTTCGTACATTTGGCTCTTTGAGACATGGATGTCTGCGATGGGGGCTCGTCATCCTATTTCTTTGATTACCGACAGAGATAAGTATATGGAAGGAGCAATTCAGAAAGTTTTTCCTACTACTCGTCATTTGTTTTGTAAGTGGCATATATCGAGCAGGTCAAAGCAAAAGCTGGCAGACGTGTATTATAAACATAATACATTGAAAATGGAACTTAAAAAATGCATATGTTTTTCGGAGACGATAGAAGATTTTGAGAGTCAATGGGAGAATATGCTTGAGAAGTATAATCTTTGGGATAACAACTGGCTACGTTTATTGTATGATATACGGCTAAGATGGGCCACAGTGTATCACAAGGATATTCTTTTCCCTGAACTATTAGTGTCTCACAGGTTAGAGAGTTTGAACAAGTTTTTCAAGAGAAATTTTAATGCAAAAACATCTTTGCTTGCTTTTATTGAAAGATTCGACCAAGCCACGACGTCTCAATATGAGAAGGAAGCTTGTGCTGATTATCATTCTACGATGTACACAAAGCCCCTTTTGAAAACACCATCTCCTATTGAAAAACAAGCTGCCACTCTTTACACGAATGCCGTGTTTGAGAAATTTCAAGAAGAGTTTGTTGAGTCTTTAGGCTATTGTGTAGACAAGCTTGAAGATGGACTTGTTAGCAAGTATAATGTAATTAGAGATGAGGATAATGGTAAAAGCTACACGGTCATATATGACGAGTGTAGTAAAAAAGCAAACTGTAGCTGCTGCAAATTTGAGTACTCAGGCATTTTGTGTAGGCATATTTTGCGGGTGTTTTTTACTGTTGGCATCCGTAGTCTCTTGGAAGCTTACATACTGAGAAGATGGACTAAGAGTACTAAAAGTGTAGCTTTGACTGAAACGGCAGTTGCTGATTCTGCAGTTAGTTCTGAAGAGAATAATCTTGTTGTTTTATATAATGATCTTTGCAATGATGCTGTTAGATTTGGAATGGATGGATGTATTTCTACAAAGGTGTATAATGTTGCAAAAGTTGCAATTCAGAAAGCTTTGGCAGAAGTTGTTACTGCAAAAAATATGCAAAGGAAGGAGCAACCTAGTTTTCAGAGATGTGCAAGGCTGCAAAAGATGCAGCAGCACAAAGTGCCATTGCCGAAATTGCAACCAAAGAAAATTTCTGTAAGAGTAAATGATGATGCTGGTAAGAAAATAATAAATGATGAATTGGATATATTATAAAGTGGACAGTGAATTTTGCATCAATAAAGTATAGAGTTCTGTGTCCTTGTATGTTTCTGATGTGTTAAAACCCAGCACATATCCCAGCAGGAGTGTTTTGGTCTTCTATCGGTAATAACAGTCTGAAACCCCTTTGTTATTTATTGATACAGGTTCATTTTTCTGTATTGTAAAACACAAATATTTAGGGTGATACTATTCGCATCCATCTAAACTTTTCCTCTCATCCATTTATGCTCTCACCCAATCAAATACTTCATTCATTCAGCCACGCTCGCATTTTCTTTTTTCTTTTTCATTTCTGATAACCATAACCCAACTTTCTCTCCCTCTCTCTTCAAACAATAGAACAAAGTTCCTCTATCCAAATTCTCCATAATCAGTCTTTTTTTTTTTCCGTCAAAAGCTTCACTAATACACATGAATCCGACTAATTTAGTTGTGATTGAGATGCTATAGGCTTTAATTGTAAGTGGATTCTCCTTTTCTTGTAAATTGTATTATCAACTAAAACCAACATAGTAAAGAATAATTTCCACCTCAAATCCGTTGTTGTGGTAAAATAGTAAAAAAAAAAAAACTTCATTACTATTTCAAAAAATAATATATCCGGTCGTTATTGCTTTTGTTCTTTTAATAAGAAAAGGGAAAAAAAAGCAATGATGAAACTAATTGTAAAAGAAACCAATATGACATAGTCAAATATATTTAATTATCATTATGCTTCCGTAGAACACCAACGGGGTCACAAAAATGTTGATTTAGCTGCATATTCTAAATATATATAATTATCTTAACCCATCAACTCCTAATGTGAAATTGATAAAATATTTATATTTAAGTTGTTAGTTTCATTTTCATCTCTCATTAGTGGTTGAGAGGATTGAAAGTAATTATGTTTGAGGTTTAGATTTTATTTTATTTTTACGTTGTTCGATTACGCATAGTCAATCATGTTTATTTATGGATCTCTTATATTTTAGGTAGGTTTTTGAAGTAATTTCTATGGCTTAATAGATGTTTAAGTAGCATTAGTAAGTGTTTAGGTGGGTGTAAATAAGATTTAGTTTTACTCCTTTAACTTTCTCTTGCTCGTTAGAAACCCTCACCTATTTGGAAACCACACTGTTTCTGAGGCTGCTCCTTCTTCTTAATTGAATATCCCATCGAGTAAAGGAATGACCTACTGGTGAATGAAATCCAGCAAGGAGGTCTCCATGAAGAAAGGTCTTTTTGACATCGAGCTGATGCAGTGACCAAGATCTGTTAGCTGCAACTGACAGAATGACTCGTTTAGTTTGGCCACAGGAGCAAACGTCTCGAGATAATAGATGCCATAGGTTTGTGTGAAACCTTTCGCCACAATACGAGCCCTCTCGATAGAGCCATCAGCTTTGTGTTTCGGGGCCACCTGCAGCCAACCGTACGTTTGCCTCTTGGTAACGTGATTTGTTCTGCTCCTCAATTGTTTTCCTACTGTACAGACCTTAAATCATGCATTTTACCTCCATCTTTTGGCTCCCTGAAATATTTATGTGCTGGAAAAATTACTTTTAAATTTTGTTTAATAGATCTAATTAATTAGAGATGGTTTCCAACTATGAAATCTGAGTAATATAAGCCAAAAAGGTTTCTGCATATATTTTTTCTGAAAAATAGTTTTGAGTTTTTGCTTCAAAATGGTTGCATTTTCACTGGATTACCTTTTTTGCAGAGATGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258746.1	4.3e-277	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	3.3e-128	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A6I9QEB9	1.2e-276	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	39.78	5e-129	458	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g457546	AT4G38180.1	631	345	8	23	622	72	698	39.78	5e-129	458
g457546	AT2G27110.2	641	351	11	7	629	36	648	38.07	8e-126	447
g457546	AT2G27110.1	641	351	11	7	629	36	648	38.07	8e-126	447

Ortholog group

Species	Genes
Allium cepa	g228875.t1; g415141.t1; g457546.t1; g481319.t1; g481320.t1; g505241.t1; g519661.t1
Allium fistulosum	AfisC1G02521; AfisC1G05889; AfisC1G05909; AfisC1G06551; AfisC2G06359; AfisC3G06359; AfisC4G01117
Allium sativum	Asa2G05399.1; Asa7G02936.1
Arabidopsis thaliana	AT4G38180.1
Oryza sativa	LOC_Os03g45300.1; LOC_Os03g50900.1; LOC_Os06g39680.1; LOC_Os06g49550.1; LOC_Os08g06930.1; LOC_Os08g06930.2; LOC_Os11g14020.1; LOC_Os12g12380.1; LOC_Os12g12380.2; LOC_Os12g12380.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	38	127	82.2	3.1e-23
PF10551.6	MULE	Domain	223	315	98.7	1.9e-28
PF04434.14	SWIM	Domain	513	537	32.1	5.7e-08

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network