Gene information

Detail information of g460302

Location

Gene	Chr	Start	End	Strand
g460302	Scaffold_83341:HRSCAF_466427	61258	62147	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	OVA15874.1	9.4e-28	Homeobox domain
Swissprot	Q6X7J9.1	5.4e-28	WUSCHEL-related homeobox 4
trEMBL	A0A200QZH5	6.8e-28	Homeobox domain

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G46480.1	47.33	1e-29	125	WOX4	WUSCHEL related homeobox 4

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g460302	AT1G46480.1	150	60	5	33	169	88	231	47.33	1e-29	125
g460302	AT2G28610.1	71	25	0	30	100	3	73	64.79	6e-25	110
g460302	AT5G59340.1	67	24	0	31	97	10	76	64.18	1e-21	99.8

Ortholog group

Species	Genes
Allium cepa	g202184.t1; g460302.t1; g497240.t1; g504364.t1; g52383.t1
Allium fistulosum	AfisC1G01154; AfisC1G06506; AfisC1G06507; AfisC1G06511; AfisC1G06513; AfisC1G06520; AfisC2G02883; AfisC3G01730; AfisC5G04448
Allium sativum	Asa0G05545.1; Asa2G04201.1; Asa5G01500.1; Asa5G02437.1; Asa5G02438.1; Asa5G02897.1; Asa7G02965.1; Asa7G03012.1; Asa7G03013.1
Arabidopsis thaliana	AT1G46480.1; AT2G17950.1; AT2G28610.1; AT5G59340.1
Oryza sativa	LOC_Os04g55590.1; LOC_Os04g56780.1; LOC_Os11g01130.1; LOC_Os11g01130.2; LOC_Os12g01120.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	34	93	67.9	4.3e-19

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0007165	P	signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0009790	P	embryo development
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009987	P	cellular process
GO:0010065	P	primary meristem tissue development
GO:0010067	P	procambium histogenesis
GO:0010087	P	phloem or xylem histogenesis
GO:0010154	P	fruit development
GO:0022414	P	reproductive process
GO:0023052	P	signaling
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048507	P	meristem development
GO:0048508	P	embryonic meristem development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051301	P	cell division
GO:0051716	P	cellular response to stimulus
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network