result

Gene information

Detail information of g460765

Location

Gene	Chr	Start	End	Strand
g460765	CHR3	150415093	150420036	+

Sequences

CDS

Protein

>g460765.t1
MEYKNNKEEAEKEMAKAEECYKLNNIRGAYKHITKAHSLDPSHPNIAKVMAAIRVHVVALDKPFRPSTDYWCEMLGCNSTDDLQTMKLQYKKMCLLTHPDTNPSICADEAFKIVSDAWEALSASQSRNQSKDNTESDNFRNTNFGASKQHNQSTSSCNNDGGQYNKKTSYNDFEVNDSSTNLDANSESSSENAGENSNTHSQSCARDHNTHSSKYDYKSCPLSTRKPSFFYDGSDNDAEYTFASKLKGKINMENMQVTTLVQMVLSWSLKDVFQRNFYKDEVKTIPKTFTSLKEYLDSFTSPLIEEVHADLCSNLETISQAPYVEVEYIEELSAAQLQYYIKVKNQDKHSDGKETYTPIEADMLVLSECKIKHISDLMKNEGSYVIAYTLKAGNETNVLSPNEYIIKTTESFPIEKYFKKHGKGPQQIKPLYAAHILTMIIFNRIWKSLDQHMSDQRSNDILNKVWNYDVLAAEGGTSISSYYVNNLEKFKLNKSQFDVVKDCLSTIYDQNLKSTTIKLIWGPPGWRHQLSSMLHLFENATSQYKLYLRTVKENEEGSIKLQELTLKEYIVEHFFSHAKELCVCLTTMSTDLPRISITAQNLENMSMLIKLVDSFGEYLMSVRVTSNMLTEIFEKSILVMLKDWFRTNDYTDIKNKLTSTRSHIVNILRVLSRTISLPDLRNRSSIQEFCLQNAVVIVCTTSTSFKLHNVQMEKPIENLIVDEAAQLKECESLIPLQLPGIRHAIFIGDEHQLPALVKSKISENAGFGRSLFERLSSLGHKKHLLDVQYRMHPSISKFPNANFYDKRISDGSNVLHPSYEKRYLAGKMYGPYSFISIEAGKETSGKNGRGWKNVIEAEVVAAIIKSLYRAFSTKKEKIGVGVISPYTAQVSSIQEKVKKTYSTKDNVSVKVQSIDGFQGGEEDIIIISTVRSNKAGNVGFLDKLQRTNVSLTRAKHCLWIVGSGSTLLKSNSVWEKIVRDAMNRGCFFDAKDDHSLDAVIVKAAIENDELDNIVKMDTLRIQKKNWKDTNGPSPKVCNRYNTPEGCKFGDRCKFSHGETSRNIVDRTATNDPGFDMKPTTSNSNLKTKICREFVKGTCMYGTGCSFAHGSTELQKSFF*

Gene

>g460765.t1
ATGGAGTACAAAAACAACAAAGAGGAAGCAGAAAAAGAAATGGCTAAAGCAGAAGAATGCTATAAACTGAACAATATACGAGGTGCATATAAGCACATAACAAAAGCTCATTCATTAGACCCGTCTCATCCAAATATAGCTAAGGTTATGGCAGCCATTCGGGTTCATGTTGTTGCACTGGATAAGCCGTTCAGACCATCTACAGACTACTGGTGCGAGATGCTTGGCTGTAACTCTACTGATGATCTTCAGACCATGAAACTGCAGTACAAGAAAATGTGCTTGCTTACTCATCCCGATACAAATCCTTCTATTTGCGCTGATGAAGCATTTAAAATTGTATCTGATGCTTGGGAGGCTTTGTCCGCATCACAGTCTCGGAATCAATCCAAGGTACTTGTTATTTGCTGAAGATTTAATGAAACAGAGTTATCATAAAAACTGTTTACCTATTGTTTATGACTAATAGGTCCATAGCGTGAATCATGTTGCAGTTATCTTTATGTATTCCATATCATTCATATAACCGCATAAATGGTCATATGTGCCCAAACTGAAATTTAATTGGGAAACTATAGTTTTATTTTGATTTATTTTCTACATATAATACTAAAACCGAGTATATTTGCTCAGCTATATATTCAGCAGTTGAATTTTGTCAAATCTAAGTATCTTATGGATATTTTTTTACCATGTTTAGTTTATCAACACATTTTTATCAGCAAAGAAATATATAGACACTGAAAATAAAAATAAAAATAGAATTTGATTGCCAAATGAAATGGGTAAACTGCATTAAAGAAACTAAGTGGGTAATATTCAATGTGCATCATGGTGCAGATAATGCGGCTCAAATTGAATGTTTGGCAATAATAATAAGCTTGATGTCATACTAGTGCATAGGCCTCTATTTATATATTAACTACTAATATCCGCTATCAATTTGTGGGCATAACTTTGGTGTTGCAAAAATAGTGCCAATTTACTTAAGTTAACTATTATTTTATCAGCATGATCATTCTACTGGGAAACAATTTTTAACCAGAGAAACTTCGGATTTTATGTTTTTTTCCCCGCTTGAAACGTTTTCTTTTTGTTTACCATTTTTACCAGATCTGATGACAGTTTTCTTTTTCCTTTTCTTTTCACAATCATAGGATAACACTGAATCTGATAATTTCAGAAATACCAATTTTGGTGCTTCAAAACAACATAACCAAAGTACAAGTTCATGCAACAACGATGGCGGTCAATATAATAAGAAGACTTCATACAATGATTTTGAGGTCAATGATTCGTCCACTAATTTGGATGCAAATTCAGAGAGTTCATCAGAAAATGCTGGTGAAAATTCCAATACTCACAGTCAAAGCTGTGCAAGAGACCATAATACTCATTCTTCAAAATATGATTACAAAAGTTGTCCTTTATCCACAAGAAAGCCTAGTTTTTTTTATGATGGTAGTGACAATGATGCAGAATACACTTTTGCTTCCAAGTTGAAAGGAAAGATTAACATGGAGAACATGCAAGTAACAACTTTGGTGCAAATGGTGTTATCATGGTCACTAAAGGATGTGTTCCAGAGAAATTTCTATAAAGATGAGGTTAATATTTTAAGTCAATTTTATTTGTTGATTTCTCCTTTAGGCTTCTTCTATGACTGGTACATGAACTAAAATGATTTTGTGTCTGAATTCTCCATTTTACAGGTCAAAACAATTCCAAAGACTTTTACCTCTTTGAAGGAATATTTAGACTCATTTACCAGTCCACTAATTGAAGAAGTGCATGCTGATCTATGTTCAAACCTGGAGACAATATCACAAGCACCTTACGTCGAAGTCGAATACATTGAGGAACTATCAGCAGCACAATTGCAATACTACATTAAAGTAAAAAACCAGGACAAACATTCAGATGGCAAGGAAACGTACACACCAATCGAAGCTGATATGCTTGTTCTATCTGAATGCAAAATCAAACACATATCCGACCTCATGAAAAATGAAGGATCTTATGTAATTGCATACACCTTAAAAGCTGGAAATGAGACCAATGTTTTATCACCAAATGAGTACATTATCAAAACAACCGAAAGTTTTCCAATAGAGAAATATTTCAAAAAACATGGAAAAGGACCACAACAAATAAAACCTCTTTATGCAGCTCACATTCTAACCATGATTATTTTCAATCGCATATGGAAATCACTCGATCAACATATGTCTGATCAAAGAAGTAATGACATTCTTAATAAGGTTTGGAATTACGACGTTCTGGTGAGTTTTTAAATGGTATAATTTGATACTCTGTTATTTTGTTATATCATAGAGACCTTGCTTTATCAATGCATTTACTTCAATTTAACAGGCAGCAGAAGGAGGTACTTCAATCTCATCATACTATGTCAATAACCTTGAAAAATTCAAGCTTAACAAATCTCAGTTTGATGTTGTAAAAGACTGCCTATCAACAATTTATGATCAAAATCTCAAAAGTACAACAATCAAGCTCATATGGGGACCTCCAGGTACTGGTAAAACTAAAACAATCAGTAGTTTGTTGTACATTTTGCTTCAAAAGAACCATAAAACTCTTGCATGTGCACCAACAAACACTGCTATAAAAGAAGTTACTACTCGACTACTGAAATTAGTGAAAGAATCATCGAGTCAGGAGCAATTCAGGCTTGGAGATCTGGCTTTGTTTGGAAATAGTAAACGAATGAAAATCAATAATGATCTTAGCGAAGTGTTCATTGAAGATCGGGTTAAAAGGTTACAAACAGTTTTTGCGCCTCTAACAGGTTGGAGGCATCAACTTAGCTCTATGCTACATCTGTTTGAAAATGCAACTTCACAATATAAGCTGTATTTAAGAACTGTGAAGGAAAATGAAGAGGGATCAATAAAATTGCAGGAATTAACACTAAAGGAATATATTGTAGAACATTTCTTTTCACACGCGAAAGAGTTGTGTGTTTGTTTGACAACTATGTCTACCGATCTACCAAGAATTTCTATCACTGCACAAAACTTGGAAAATATGAGCATGCTCATCAAATTGGTTGATTCTTTCGGGGAATATTTGATGTCCGTGAGAGTTACTAGCAACATGCTAACTGAAATATTCGAAAAATCAATTCTTGTAATGTTGAAGGATTGGTTTAGGACAAATGATTATACTGATATAAAAAACAAGTTGACAAGCACGCGGTCTCATATTGTGAATATTCTACGAGTCCTGTCCAGAACTATTTCTCTTCCTGATCTACGTAACAGAAGCTCAATACAGGAATTCTGCCTACAAAATGCAGTTGTAATAGTTTGCACAACTAGTACATCCTTTAAATTACATAACGTGCAAATGGAAAAGCCGATAGAAAATTTGATAGTTGATGAGGCAGCGCAGTTGAAGGAATGTGAGTCTTTGATTCCTTTACAGCTGCCTGGAATACGCCACGCTATTTTTATAGGCGACGAACACCAATTACCAGCTTTGGTCAAAAGCAAGGTACATTAATCATATTACACTTGAACGTTATACAGTTCTTAGTTCTTACTATTATGTGAACTTTGCAATTTACCAGATAAGTGAAAATGCTGGCTTCGGCAGAAGTCTTTTTGAAAGATTGAGCTCTTTAGGACACAAGAAACACTTACTTGATGTTCAATATAGGATGCATCCTTCCATAAGCAAATTTCCAAATGCTAATTTCTATGATAAAAGAATTTCCGATGGTTCAAATGTGTTGCATCCTAGCTATGAGAAACGGTACTTGGCTGGAAAAATGTATGGCCCTTATTCATTTATAAGCATTGAAGCTGGAAAAGAAACATCTGGTAAGAATGGAAGAGGGTGGAAGAATGTGATAGAAGCTGAAGTTGTAGCGGCAATTATCAAAAGCCTTTACAGAGGTAATATAGTATAATATGGGCATTATTCTTATTCTGATATATAATAATTACACCTGTAAGTTAATGATCATCATAGACTTATGTTCCTTGTCATATTCTTTGGTCCGGTGTTACAGCATTCAGTACCAAAAAGGAAAAGATTGGAGTTGGAGTTATTTCACCATATACAGCTCAAGTTTCATCTATACAAGAAAAAGTAAAGAAAACATATTCGACCAAGGATAATGTTTCGGTCAAAGTTCAATCTATCGATGGATTTCAAGGAGGAGAAGAGGATATAATAATCATATCAACTGTAAGATCCAATAAAGCTGGGAATGTGGGTTTTCTTGATAAGCTTCAAAGGACAAATGTGTCTCTAACCAGAGCAAAGTAAGAACCCTACAAATACACAGTAAGTTTTATACTACCATGACTTGAATGTATGATCATAATTGACAAATCATTTTGTGCAGGCATTGCTTGTGGATAGTAGGAAGTGGATCAACTTTGTTAAAAAGCAATTCAGTATGGGAAAAGATAGTAAGAGATGCGATGAATAGAGGTTGCTTCTTTGATGCAAAAGATGACCATAGTCTGGATGCTGTAATTGTCAAGGCAGCCATTGAAAATGATGAACTTGATAATATAGTAAAAATGGACACACTCCGTATTCAAAAGAAAAATTGGAAGGTATTCCATCAATCTCAAACTTTCTAATGCACCACAATATTATAACTAACATAATATTTCATTTTAACCTTTTCAGGACACTAATGGCCCCTCTCCAAAGGTGTGCAACAGGTATAACACACCTGAAGGATGCAAGTTCGGTGACAGATGTAAATTTTCACATGGTGAAACAAGTCGGAACATAGTAGACAGAACTGCAACAAATGATCCAGGCTTTGATATGAAACCAACCACATCTAATTCTAACTTAAAGACAAAGATCTGCAGGGAGTTTGTCAAAGGTACCTGCATGTATGGTACTGGATGCAGTTTTGCTCATGGTTCAACCGAGTTGCAGAAATCATTTTTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249491.1	3.2e-208	helicase SEN1-like
Swissprot	Q00416.2	7.6e-45	tRNA-splicing endonuclease positive effector
trEMBL	A0A6P5ER60	3.5e-188	uncharacterized protein LOC109707103 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G52090.1	41.87	1e-108	392		P-loop containing nucleoside triphosphate hydrolases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g460765	AT5G52090.1	492	256	7	525	1007	186	656	41.87	1e-108	392
g460765	AT1G65810.2	505	257	6	525	1027	392	863	42.18	4e-108	389
g460765	AT1G65810.2	291	160	12	260	525	22	298	31.62	2e-25	115

Ortholog group

Species	Genes
Allium cepa	g460765.t1; g505856.t1; g55783.t1
Allium fistulosum	AfisC3G03934; AfisC3G03940
Allium sativum	Asa2G04949.1; Asa7G07527.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g45900.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00226.28	DnaJ	Domain	73	129	37.3	2.1e-09
PF13086.3	AAA_11	Domain	681	760	71.4	8.5e-20
PF13087.3	AAA_12	Domain	768	964	203.1	3.1e-60
PF00642.21	zf-CCCH	Family	1035	1058	22.7	6.1e-05
PF00642.21	zf-CCCH	Family	1086	1109	21.2	0.00017

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10706	SETX, ALS4; senataxin	EC:3.6.4.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network