result

Gene information

Detail information of g463433


Location
GeneChrStartEndStrand
g463433Scaffold_83631:HRSCAF_466717106115108674+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020248955.19.6e-103LOW QUALITY PROTEIN: auxin response factor 2-like
SwissprotQ94JM3.21.8e-101Protein MEGAINTEGUMENTA
trEMBLA0A4D6NTQ82.5e-100Auxin response factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G62000.170.876e-107 383ARF1-BP;ARF2;HSS;ORE14auxin response factor 2

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Ortholog group
SpeciesGenes
Allium cepag129277.t1; g340324.t1; g463433.t1; g85906.t1
Allium fistulosumAfisC2G08481; AfisC3G01342; AfisC3G06139
Allium sativumAsa2G00963.1; Asa2G05051.1; Asa3G04670.1; Asa6G00931.1
Arabidopsis thalianaAT5G62000.1; AT5G62000.2; AT5G62000.3; AT5G62000.4
Oryza sativaLOC_Os01g70270.1; LOC_Os01g70270.2; LOC_Os01g70270.3; LOC_Os01g70270.4; LOC_Os11g32110.1; LOC_Os11g32110.2; LOC_Os11g32110.3; LOC_Os11g32110.4; LOC_Os12g29520.1; LOC_Os12g29520.2; LOC_Os12g29520.3; LOC_Os12g29520.4; LOC_Os12g29520.5

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02362.18B3Family4713865.62.6e-18
PF06507.10Auxin_respFamily16322176.71.1e-21

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001101Presponse to acid chemical
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007275Pmulticellular organism development
GO:0007568Paging
GO:0008150Pbiological_process
GO:0008285Pnegative regulation of cell proliferation
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009737Presponse to abscisic acid
GO:0009791Ppost-embryonic development
GO:0009838Pabscission
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009900Pdehiscence
GO:0009908Pflower development
GO:0009909Pregulation of flower development
GO:0009911Ppositive regulation of flower development
GO:0010033Presponse to organic substance
GO:0010047Pfruit dehiscence
GO:0010150Pleaf senescence
GO:0010227Pfloral organ abscission
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0010959Pregulation of metal ion transport
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032504Pmulticellular organism reproduction
GO:0032879Pregulation of localization
GO:0033993Presponse to lipid
GO:0034762Pregulation of transmembrane transport
GO:0034764Ppositive regulation of transmembrane transport
GO:0034765Pregulation of ion transmembrane transport
GO:0034767Ppositive regulation of ion transmembrane transport
GO:0035670Pplant-type ovary development
GO:0042127Pregulation of cell proliferation
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043266Pregulation of potassium ion transport
GO:0043268Ppositive regulation of potassium ion transport
GO:0043269Pregulation of ion transport
GO:0043270Ppositive regulation of ion transport
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048366Pleaf development
GO:0048367Pshoot system development
GO:0048437Pfloral organ development
GO:0048438Pfloral whorl development
GO:0048440Pcarpel development
GO:0048467Pgynoecium development
GO:0048481Pplant ovule development
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048582Ppositive regulation of post-embryonic development
GO:0048608Preproductive structure development
GO:0048609Pmulticellular organismal reproductive process
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051049Pregulation of transport
GO:0051050Ppositive regulation of transport
GO:0051094Ppositive regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051240Ppositive regulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0090567Preproductive shoot system development
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:0099402Pplant organ development
GO:1901363Fheterocyclic compound binding
GO:1901379Pregulation of potassium ion transmembrane transport
GO:1901381Ppositive regulation of potassium ion transmembrane transport
GO:1901700Presponse to oxygen-containing compound
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903286Pregulation of potassium ion import
GO:1903288Ppositive regulation of potassium ion import
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1904062Pregulation of cation transmembrane transport
GO:1904064Ppositive regulation of cation transmembrane transport
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2000243Ppositive regulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090693
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14486K14486, ARF; auxin response factorEC:- Plant hormone signal transductionko04075

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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