result

Gene information

Detail information of g464172

Location

Gene	Chr	Start	End	Strand
g464172	Scaffold_83723:HRSCAF_466809	443789	452959	-

Sequences

CDS

Protein

Gene

>g464172.t1
ATGCCCACTACTTTTCACCATCTCCTCCATGCCAAAACCCTAAAACTAAAAAAGAAACTCAAAAAATCCAGACTAAAAAACGCATATAAAACCTCAAAATCCCAAATCGACAAAACCCCATTAAATGATGAAGAAGAGGAAAACGAACTGGGGTTTAAGCTGAAATCTAATTCAGATCCCCATTCTCACTCAATCCAACCTCTTGGCAATCTCTTTTTAGCCAATCAACCCAATATCCGGAACTCCGGATTAGGATCCCTTCAAATTTTCCCAGATGATCTAATTATCGATATTCTAGCATTCCTTGATGCGAATTCTTTATCTGTTTTATCTGTTTGTTCCAAATCCTTGTATGTTTTTTCTACCCATGACCCTTTATGGAGAAACTTAACTCTTGATGTTTTAAAAGGCGATTTTGATTTTAATGGGAGCTGGAGAAGTACTTTTGTGACCAACTGTGGTTATAAATATGTTCCGTGTTCAAAATTTAGAGTTAGGAACTTTTACTCTGATTATCTGTTTCAGAGCTGGTTGTGTGCTAATCTTGAAATGAAATATGTGTGGCTGGATAGAGATAACATTGATAGAAGGAGAGGGATTTCAGTTGATGAATTTGTTTCTTGTTTCGAGGAGAAGAATAAACCTGTATTATTGGAAGGTTGCATTGATAATTGGCCAGCATTGAAGAAATGGAGTAGAGAACATTTAGTTCAAGTTTGTGGAGAAGAAAAATTTGCTGTAGGTCCAGTTGATATGAAGTTAGATAAGTTTTTTAGGTATTCAGATTTAGCTAAAGAAGAACGTCCCCTTTATTTATTTGATTCAAAATTTGTTGAGAGAGTTCCTAAACTAGGATTAGATTATGAGGTTCCTATATATTTTAGGGAAGATCTATTTTCAGTATTGGGAAAGGAGAGGCCAGATTATAGGTGGATTATTATCGGGCCAGCGGGTTCGGGTTCTTCGTTTCATGTGGATCCGAATTCAACTTCTGCTTGGAATGCGATTATAAAGGGGTCGAAGAAATGGGTTATGTTTCCACCAGATGTGGTTCCTCCGGGCGTGCATCCAAGCCCCGATGGAGCGGAAGTTGCATGCCCGGTATCCATTATGGAGTGGTTTATGAATTTTTATGATGCATGTAAAAATTGGGAAAGGAGGCCAGTTGAGTGCATTTGTAAGGCAGGAGAGGTGGTTTTTGTGCCTAATGGTTGGTGGCATTTGGTGATTAATCTTGAGGATTCCATTGCCATCACTCAAAATTATGTGAGCAGGTGAGCTTTCTTCTGGTTTTTTTTAGCAAGGTCTAATGTGTAGTCTAATTCGTTGCTTAGATAGAGATATTTGTTTCATCTATTCAATATTTCATTTATACTCTTGGATTAAAAATTGAAATCGTGCTACTTTTACTTCATTGATCTTCAAGTAAATATACGATTACACCTGTTAGAATATGATCCAACCCATTAACCCTTGTTGTAATTGTGTTGGATCCACACAGTTAACGGAAATGATCAAAAATGAGTAGCTCAACCATTTTGCCCTTTCATTAAAAGAGTCATGAGTAACTCATTTGTTAAAAGTATGAAATCCAAAAATTTGAATTTTGATAATTTGTAGGTTTGAATTTTGAAAATTTGTACTCAAACGACTAGATTTGTTATTTTTTTCGTTCATATTGCAATAAGTGTTAATCGCTAGCGCTTGGATCGAATATGGCCGAGGCCGAGTGTATGTAATTAGAGAATATAACAGTAAATTGAGGGTTTTTGATTTGAGAATGATTTGAGAACATAAAAAGCAATTTCAATCAAGAGAAAGAGAGTTTGAGTGCATATGATTGAGTAATTGTTTTGGGATGATGGGAGGCTTATATAAGAGTGAAAGGAAGTCATTAAATAAGTGCCTCCCTTCATAAATTTGTTTGACGAAGGGAAGTTAATACACGAAACACCTTTTCAAAAATATAGCCGTTGTAGGAATTTTAAACAACAGTAGTTTGCTTCAAAAGAACTACCAAAGGTCTACCGAGAATGTGGTTGTTGGTGCCTTTGATAGCATATTGAGTCAAAATACAGCACTTTTCTGCTGTGTAAAATGGGTTGTATATATTTGCATTTTTTGACATTTTTTATCAGTTTTCTTGCATTAAAAAATTCCCAAAAAAGCTTAAATATATTTTAGCATATATTAGAGGTTGTATAGAAATTTGAAGTGGTTTGAAATTTGTTTGTGGGATTTTGACAATTTTATACTATGGTGACTCGTTATAGACTCAACCTATAGCATGCATTCTATTGAAGCTTGAGTTCATTTTTTTGGGTCGTCTTGATGCATCCAAGTTCAATTGGCTTTGTAACATGGTATCAGGTATCGGTCGACACTCCGAGATTTCGGGAGTACCGTACCGGTGCCGACCTAGAGCGAGCCGAAATTGGCTTCAAAAACCGGTTCCGCTTAAACTAAAAAAAAGCGCAGAGTCACCGAACCTTAAATTAAAGGAATCGAAAGCAAAATCAGCAGTACCTTCGTCGTCAGCGTTACTGCAGCCTCGACCTTCTGCAACGGTGAGGGATTCAAAGTTGAAATCGACAGCAGTGAAGTCGAAAGTCGAAATCGACACTAGGGAAGTATTGCCTTCTATAAAAAAAATTCGAAAGTCGAAATCGACAACGCTGAAGTTTTTTTTTCCATCTTCGACTTCTTTTTTTTTGGTTTTGTCTGTGCCCTAGTTTTGTGATTATGCGGCAAGAACTGAACTGCTGAGGTTTGCTAGTTGGCTTAAAGTTAGGCTTTTAGTTTTGGGCTGTACTTTTCTTTGGGCTTTATAAATATTAGTGTACCTAATATTTACATTTACGGTAGCTTATTTTGTCAAGGCAGCAAGAACTTGTTTTGGGCTATACTTCATGTTATTACTTTATTATTCTTAAGTATAATTTAGTATTAATTTGGCTTATAATGTTAAGCTTGTATGGTGTTAAGTTAAATTCAATTTTATTTACAAAGATCGTTATTGCAAGTTTATCAACAAACAATTGAAAACCAAAATTTGAACCGAAACCGAAACAAAAACCGAAACAAGCGAAATTTTCGAAACCGAGACGAAATCCGAGTTCTCGAACCTTGCTTTGTAAACACCACGATTGATCTTAGAATGCTCGAACACCCGATTGTTGATTTATATCCTTCATGTCTTGTATTTGTGCATATGCATGTTATCGTGTTGGATTGTGCATAACACTTGATAAAATCATCAGTAGCATTGGTGTAATGTTGTTGTTATCAAAATAGCAAAACCATTTTCCTAACAATAAGTTCATCATACTAATTCAGATTCACGATAGACTTTGACCATACAGACAATATGAAATATTCAGATGCTTCATATTTTGAATGTACGATGTAGTTCTCTGTATTGACCAATAAATGACAAATAACAAACTATGGGTGCATTCACAGTAATAATTTACGGCTTTTTGCATCTGATGCTGAAACTGGGTAAACAACCTTCTTGCGTCATTTATTTCGCGTGAGAGAAATAATCCATTGGTGTCCAACGTGCATGGCTAGTTTTTCTCCAATAATTATAATCCCTCTTTTCAATACCCATTTCCCATATCGATTTACTAACACAAATACACTTTACTCTTTCGCTAACTTACCCTTTCATAGTACTCCTTTCGCTTAACAAAACACGCCCTACATCTTAACATGTAAACTCTAACTTGAATAGTACTTCAATGATTTCTTCGTCTCTAAAACATTAGAGAGTCGTGCGTAAGTTTACCCATAACAATTTAAAATTTGGGATAGTCATGCGGAAATTTATCATCTAAATTTGAATTTGAAAATTTGAAATTTGAACTTTTGAGTTTACATTGAAAATTTTGAATTTATGTCTGAAAATTTAAGGTGGTGTTTGGTTTAAAAACAAAATTTGTTTTCGGTTTTCAATATATATGTCAAATATGAGAAGAATGAAGGAAGGACGGAGTGGATGAAAGAAAGACGGATGAGAGGACGAATGAGACAGAGGGACGACAGAAAAATAGATTGTTTCACGTGTTTGTGTTATTTTCCAAAACACGAAAAATAAAAAAAAGTTGCTTTCTATTTTGTATGTTAACTTCGTTTTATAAGTTGGTCGTTTTCGGCAATATGCACGCGTCGAGTGCTTTTTTGTATGCACGAAAACCCAAAACTAAAAATAACAAACCAAACGCTTCTTAAATTTTGCAATTTGACTTTGAATTTGAGTGTTTAATAATTTGAAGCAGAAAATGTGTATGGAATTTTGAGTTTGAATATTTGAGAATTTGAATTTTATATTGAACCTGAACTTTAACTTTTGAGTCTACGTTGGAAAATTTGAATTTAACATTTTGAGAATTTTTTGGTCAAGGACTTCCAACTCAAATGATTAAAGATACGACGATTTAAACAAATGTTACAGAGGTCATGAGTTTGAGTTTTGCTCAGCTTGAATAAAGTATCATTTTTGTTATAAAAATAAAAGTTTTTGAAATTTTAAAATTTGACTTTGAATTTGGATGTTTAAAAAATTGAAACTGAAAATCTGAAATTTTGAATTTTGATTATTTTAGATATTCAAAATGTAAAAAGCAAAATTTGAATTTATTTTATTATTTATTAGTCAAATCTAATTTAAACCATTTAATAGGGTAAATGAGCGACTCGTATATTAAATAGGTTGAACCAGATTGATCCATATACCAAATGGATCAAATGAGATGAATCAGAAATGAATCAGATCAATTTTTACCCGATTCTTTTATAACCTAACCCTACCCGTTTGACAGATCAGCTTAACTTTATCATTTAAGTGATGCTTGCACAATTACGATTGTGCTACCAACCTAACACACAAATATCTGTCGCATGTGAATCAGGTCCTTCATGCACTCGTATCAATATACATGCATTTGTAGGAATTTATTGTATCGTTTCAGTGTGCAGTACAAACATAGTAACTTAGATATAAAAAGTTTTGGTCAGCAATGTTACCAAAAAAGCGTGTAAATTGAGAAGTAATTGGCAATGTTATCTTGATTATTCACGACTAATTTTTATATTGTTAACTATGCTCACCGTATATAGGAGAGCTAGTTGATACTATGACTAGGAGACGTGTAAATATCTTATGCGTTCAAGAGACCAAACGGACGGACCAGAAGGCGAAGGAGATGGAGAACACAGGCTTCAAGTTATGGTACACGGAAAAAGAACGTAATAAGAACATGGTAGGCATCTTAATTGACAAAAACCTTAGAAACGGGGTTGTCGACGTTAGGAGACAAGGGGACAGGATCATCCTAGTCAAGCTGGCAGTGGACAATATGATTCTGAACGTTATTAGTGCCTATGCCCCACAAGTAGGTCTAAGTGAAGCCATCAATAGAAATTTCTGGAAAGAGCCAGATGTTATGGTTAGAGATGTGCCTAGTAGCGAAAAACTTTTCATGGAAGGAGATTTCAACGGGCATGTTGGTACAACTAGTGGTGAGTTTGAGAGAGCGCATGGTGGTTTTGGATGTAACGATAGGAATCAAGAAGGACAAGAAATACTGAATTTCGCTATTGCTTATGACCTCATGATAGTTAATACCTTCTTTATAAAGAGAGTCACATTTAGTTACTTTTAGTAGTGGTCAACACTGTAGCCAGAATGACTTTGTCCTTACTAGAAGAGATAACAAACAAGCTTGTGTAGATTGCAAAGTCATACCTGGAGAATGCGTTGTCTCACAACATTAGCTCATGATATCCGAGTTTCGTCTTCGAATACGTGTTCGATGGGATACAGGAGCCAAGATTAGTCGGACGAAATGGTGGAAGTTCAAAGGAGACGCTTCACGGGTGTTTAAGGATAAGGTGATGGGATAAAGGGCATGGAATTTGGAAGAAGCAAATCATACGTGAGATGAGATGACAACGCGCATTCGAAAAGTGACTACTAAGGTGTTTGGGTAACGAAATGAAATAAACGCAACCTAAAGATTCGTGGTGGTGGAACAGTGATGTGCAAAAGGCTATTAAAGAGAAGGAATGTTATAAGTGCTTGCATCATCACATGAGCGAGGACAACATGCAAATGTATAAAGTGGTAAAGAAGAACGCAAAGAGAGCGGTGAGTGAAGCAATGTGTCAGACGTATGAAGACCTGTATCATAAGCTAGGTGCGAAGGAGGGTGAAAAGAACGTCTACAGGATAACTAAGCTCCATGAGAGGAAGACAAGAGACTTCAAACAAATTAAATGCGTCAAAGATAACAATAATAGACTTTTGGTGAATGACGATGACATAAAAAATAGATGAAGAGATTACTTCGACAAGCTATTTAATGAAGAAGGTGATAGCATTATGATCGAGATAGACGACTCTTTTGATGACACTAGTAGACATTTTGTTCGGAGAATTTAAAAATCCGAGGCAAATAAGGCGCTAAAACGGATGAAAGCAGGCAAGACATTGAGGTCTGATAGCATCCCCATTGAGGTGTGGAGATGCCTTGAAGATGCAGGGATAGTCTGACTAAGTTGTTCAATAATATTATCAAATCAAACAAGATGCCAGATGAGTGGAGGAGAAGCATATTAGTTTCAATTTTTGAGAATAAAAGAGATATCCAAAGTTGCACAAACTACAGAGGAATTAAGCCTATGAGTCATACGATGAAGCTTTGGGAGAGAGTTATTGAACATCGATTAAGAAGAATGACAAGTGTTCCAAAAAATCAATTTGGCTTCATGCCTAGGAGGTCGGCCACATGAGCGATTTTCTTGATAAGACAACTTATGAAGAGGTTTAAGGAGCAAAAGAAGAATCTACACATGGTATTTATCGACTTGGAGAAAGCTTATGACAAGGTTCCGTGAAAGGTGATGTGGTAGGCTCTGGGAAAAAAAGAGTCCCAACAAAGTATATTACCCTTATTAAGGATATGTACGATGATATTGTGATTGGTATCAGAGCATGCGATGATGCAAACAGTGATTTTTCCATTAACATAGGATTACATCAATGGTCAGTTTTGAGTTCCTACATTTTTACCCTAGTGATGTATGAGGTTACGAAGATTATACAAGAGGAGATTCCTTAGTGTATGTTACGTGCTGATGATGTGCTAATTGATGAAAGTAGAACTAAGGTTGATAGACAACTTGAGCTGTGGAGACAGACTTTAGAATCAAAGGGATTTAGGTTTAGCTGAACTAAAACAGAGTATATGAAGTGCGAGTTCAGCGGTGTCAGGTCAGAGGATGGAGATGCCACTCTGGTCGGACAAATAGTTCTTAAGAAGAAATTCTTTCGATATTTAGGATCAATGTTGCAATGTAATGGTGAGATTGATGATGTTAGTTTTAGAATTCGAGCGGGATGTTTGAAATGACGACTAGCATCTGACATTTTCTGTGATAGGAAAGTCGCACAGAAGCTTAAAAGAAAATTTTACAGAACGGCAATCAGGCATGCGATGTTGTATGGTGTAGAATGTTGGCATACTAATAACTAACACGTTTAGAAGATAAGCGCAGCAGAGATGCGTATGCTGCGATGGAGTCGTGGTCATACAAGAAGAGACCGAATTAGAAATGATGATATATGTGAAAAACTTGAACTAGCACCAATTGAGGAGAAGTTAATTGAGCATCGCTTAATATGGTTTGGACATCTTCAACGAAGGCTATCTGAGGCACCTTTGCGCGGTGGAATTATAAACCGCGTCATATGCTTAAAGAGAGATAGCGGTCGACCAAGGTTGGCATGGAGGAAGTAGTAAAAAAAGACTAAATGATTGAAATATATCCGAAGAGCTGGTAACGGATAGAAGCACGTGGAAGTTAGTGATGCACATACCAGAACCTCTAGCTATGAGTTTTATAAGTTTTAGATTATAGGACTAGGGAAAAGGAGTCTAAAACGTAACGTTTGGTTTTTGATCAATATTACTATCGGCACCATTATTACTATTTATTCTATTATCATCATTTATTTGTTTTTTTTTACACACATATATATATATTTATCTTTATTTATACTTTACTTAGTTATTATTATTATTAATTTACTTTTTTTATATTATTATTGCTATTGCTATTGTTATTATTATAACCTTTAAATGAGCTTTGTCATTTAATTTTGGGTTCCATTTCTAGCCGGCCCCAATTTGTTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATGGCTTTGTTGTTGTTGTAACTATGCTCACTGAAACTATTTTGTTACTAGTCTATGGGCACAGTTTACATGAATGCACGACCCTCGTACATCACATGCAGCCTGCAGGAAAACTGAAATTGGGTTCATTAGAGCATCTTCAGCAATAGATAAAACATTAGCAGCGACCTTATGAAATTAAGTTGTCTACTTTTTCCTGGATAGTAAATAAAAGTAACAATGACTCCACATAAGGTCCTAGTCGTTTTTTTTTCACATGTGGAAACTTCGCATTAATTGGGGTATTTTCACTAATTTTCTTCACCTATTGTACATAACCACTTGAACAATTTACAAAAATTTTTTTAGTGAGAATAACACCGCTGGAGATAATCTTACCTTGCCCTGATTATAGACTTGATATGTTCATATAAAAATATATGTTTTATACACTTGTCGCATAATTGTTGAGAGTATGATTATTTATGCAAGTGATGTAGCAATCACGCAAAGCAATCTGTTTATAAACAATGGGAGATTTTAGCATCTACCTAATATTTTCAAGTCTCTGGCTATGCAATTTTTTTTTCCTTTAATGCAACAAAGCCATAGTTAATGTTTTTCTTCCTTTTTATGCACTATTTGTAGGAGGAACTTGTTGAATGTGTTGGACTTCTTAAAGAAGCCAAATGCAAGTGAACTCGTCTCGGGTACTAAAGACCGAGTAAATCTACATGACAGGTTTAAGAATGCCATTAATGCTACTTTCCCCGGGACTATTGATAAACTTACATTAGAAGCTCAAGAGAAGATGAAGAACCTTCGCAAGAAGCAAAATTTTTGGGAAACAGCCAGTTCAGAGGGATTCAAATTTTCATTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268385.1	1.5e-213	LOW QUALITY PROTEIN: F-box protein At5g06550
Swissprot	Q67XX3.1	1.3e-190	F-box protein At5g06550
trEMBL	A0A8B7C247	4.3e-202	F-box protein At5g06550

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06550.1	67.61	0.0	660	JMJ22

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g464172	AT5G06550.1	457	143	2	51	502	46	502	67.61	0.0	660
g464172	AT1G78280.1	368	208	8	75	428	5	368	38.59	1e-71	267
g464172	AT5G63080.1	288	149	12	194	437	9	285	29.17	2e-19	94.4

Ortholog group

Species	Genes
Allium cepa	g464172.t1
Allium fistulosum	AfisC6G01433
Allium sativum	Asa8G05014.1
Arabidopsis thaliana	AT5G06550.1
Oryza sativa	LOC_Os11g36450.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00646.30	F-box	Domain	88	129	21.9	0.0001
PF13621.3	Cupin_8	Domain	204	422	74.7	8.6e-21

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0016570	P	histone modification
GO:0006325	P	chromatin organization
GO:0006464	P	cellular protein modification process
GO:0006479	P	protein methylation
GO:0006807	P	nitrogen compound metabolic process
GO:0006996	P	organelle organization
GO:0008150	P	biological_process
GO:0008213	P	protein alkylation
GO:0009987	P	cellular process
GO:0010029	P	regulation of seed germination
GO:0010030	P	positive regulation of seed germination
GO:0044212	F	transcription regulatory region DNA binding
GO:0016043	P	cellular component organization
GO:0016569	P	covalent chromatin modification
GO:0016571	P	histone methylation
GO:0018193	P	peptidyl-amino acid modification
GO:0018195	P	peptidyl-arginine modification
GO:0018216	P	peptidyl-arginine methylation
GO:0019538	P	protein metabolic process
GO:0032259	P	methylation
GO:0034969	P	histone arginine methylation
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0043414	P	macromolecule methylation
GO:0043565	F	sequence-specific DNA binding
GO:0043985	P	histone H4-R3 methylation
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048582	P	positive regulation of post-embryonic development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0051094	P	positive regulation of developmental process
GO:0051239	P	regulation of multicellular organismal process
GO:0051240	P	positive regulation of multicellular organismal process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0097159	F	organic cyclic compound binding
GO:1900140	P	regulation of seedling development
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1990837	F	sequence-specific double-stranded DNA binding
GO:2000026	P	regulation of multicellular organismal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network