result

Gene information

Detail information of g464254


Location
GeneChrStartEndStrand
g464254Scaffold_83731:HRSCAF_46681714489501449540-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_015882629.12.9e-19transcription factor bHLH117
SwissprotQ9SND4.13.9e-05bHLH transcription factor bHLH037
trEMBLA0A6P4AA822.1e-19transcription factor bHLH117

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G22100.142.065e-2094.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag464254.t1; g464267.t1
Allium fistulosumAfisC3G00144
Allium sativumAsa8G05401.1
Arabidopsis thalianaAT3G22100.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00010.23HLHDomain489629.55e-07

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001046Fcore promoter sequence-specific DNA binding
GO:0001047Fcore promoter binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001228Ftranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0016070PRNA metabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032774PRNA biosynthetic process
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0046483Pheterocycle metabolic process
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097659Pnucleic acid-templated transcription
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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