result

Gene information

Detail information of g466314


Location
GeneChrStartEndStrand
g466314Scaffold_83926:HRSCAF_467012309760359641+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020269665.10.0e+00chromatin structure-remodeling complex protein SYD
SwissprotF4IHS2.10.0e+00Protein SPLAYED
trEMBLA0A8K0IID60.0e+00Chromatin structure-remodeling complex protein SYD

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G28290.172.730.01440CHR3;SYDP-loop containing nucleoside triphosphate hydrolases superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag466314.t1
Allium fistulosumAfisC4G06201
Allium sativumAsa5G05225.1
Arabidopsis thalianaAT2G28290.1; AT2G28290.2; AT2G28290.3
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily11071389223.23.5e-66
PF00271.28Helicase_CFamily1415152862.24.5e-17
PF14619.3SnACDomain1622171278.15.2e-22

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0051276Pchromosome organization
GO:0000166Fnucleotide binding
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0000988Ftranscription factor activity, protein binding
GO:0000990Ftranscription factor activity, core RNA polymerase binding
GO:0000991Ftranscription factor activity, core RNA polymerase II binding
GO:0008152Pmetabolic process
GO:0002831Pregulation of response to biotic stimulus
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003678FDNA helicase activity
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0042623FATPase activity, coupled
GO:0003824Fcatalytic activity
GO:0004003FATP-dependent DNA helicase activity
GO:0017111Fnucleoside-triphosphatase activity
GO:0004386Fhelicase activity
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005524FATP binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016887FATPase activity
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006996Porganelle organization
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0008026FATP-dependent helicase activity
GO:0008094FDNA-dependent ATPase activity
GO:0008144Fdrug binding
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009611Presponse to wounding
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009908Pflower development
GO:0009966Pregulation of signal transduction
GO:0009987Pcellular process
GO:0010104Pregulation of ethylene-activated signaling pathway
GO:0010199Porgan boundary specification between lateral organs and the meristem
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010646Pregulation of cell communication
GO:0048646Panatomical structure formation involved in morphogenesis
GO:0010959Pregulation of metal ion transport
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0016462Fpyrophosphatase activity
GO:0016514CSWI/SNF complex
GO:0016586CRSC complex
GO:0016787Fhydrolase activity
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0017076Fpurine nucleotide binding
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0022414Preproductive process
GO:0023051Pregulation of signaling
GO:0030554Fadenyl nucleotide binding
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031347Pregulation of defense response
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032101Pregulation of response to external stimulus
GO:0032392PDNA geometric change
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032508PDNA duplex unwinding
GO:0032553Fribonucleotide binding
GO:0032555Fpurine ribonucleotide binding
GO:0032559Fadenyl ribonucleotide binding
GO:0032774PRNA biosynthetic process
GO:0032879Pregulation of localization
GO:0032991Cmacromolecular complex
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0034756Pregulation of iron ion transport
GO:0035639Fpurine ribonucleoside triphosphate binding
GO:0036094Fsmall molecule binding
GO:0040029Pregulation of gene expression, epigenetic
GO:0043044PATP-dependent chromatin remodeling
GO:0043167Fion binding
GO:0043168Fanion binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043269Pregulation of ion transport
GO:0043900Pregulation of multi-organism process
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044444Ccytoplasmic part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0048367Pshoot system development
GO:0048583Pregulation of response to stimulus
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0048859Pformation of anatomical boundary
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051049Pregulation of transport
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070035Fpurine NTP-dependent helicase activity
GO:0070297Pregulation of phosphorelay signal transduction system
GO:0070603CSWI/SNF superfamily-type complex
GO:0071103PDNA conformation change
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0080134Pregulation of response to stress
GO:0090304Pnucleic acid metabolic process
GO:0090567Preproductive shoot system development
GO:0097159Forganic cyclic compound binding
GO:0097367Fcarbohydrate derivative binding
GO:0097659Pnucleic acid-templated transcription
GO:1900150Pregulation of defense response to fungus
GO:1900390Pregulation of iron ion import
GO:1900393Pregulation of iron ion transport by regulation of transcription from RNA polymerase II promoter
GO:1900400Pregulation of iron ion import by regulation of transcription from RNA polymerase II promoter
GO:1901265Fnucleoside phosphate binding
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:1902494Ccatalytic complex
GO:1902531Pregulation of intracellular signal transduction
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1904949CATPase complex
GO:2000022Pregulation of jasmonic acid mediated signaling pathway
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090691
GO:0140097
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11647SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4EC:3.6.4.- Thermogenesisko04714
K11786STH1_SNF2; ATP-dependent helicase STH1/SNF2EC:3.6.4.- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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