result

Gene information

Detail information of g468275

Location

Gene	Chr	Start	End	Strand
g468275	Scaffold_84166:HRSCAF_467252	99749	104273	-

Sequences

CDS

Protein

Gene

>g468275.t1
ATGAATATGCAGCAACAAAACCAAACATTGAACGAAGAGAATCTGTCAAATCTAACTTCTGCATCTTGCGAAGCTAGCGTCTCTTCAAATCAACAACAATCTTCCTTTGTTTCTCCAAATTTAAATCCTAATTTGAATACAAATTCAACTTCAAATCCAGTGAAGAAAAGAAGGAATCTACCAGGCAATCCAGGTTCAGTTCTGATAACTGTTCAATTTTATTGTACATATAAAATTCTATGTACTACAAACACATAGGTAGTAATATTCTCTGATAACATAAGATGTGAACTTTGATATTATATATATGAAAGAACCAAATTTAGATATTTGGCTACGTAACAAAAACTGTTTTACCATTATTATCAGTCCTCAAAAGATTGCATATATGTTGTAGCATAGCATTTTATCTAAATATCACTAGATCTAAACTAAAATTCAGATAGAGGTCCAGTATATGGTTCATCAACAATTTAATTGAGACGAACTTAAGAAAAAGTTGAATTCCAGGTTTGGACTATTAAGGTATATATGAATTAGTTATATGGTTCTAGTCAGAGTACTATTTTGTTCACATTTTTAAGAAGTAGTGTGCACATAATTACATCGAGAAGATTCAGAGTTAGAAAATCTTTGACTACACAATCATATCATGATGTTAGTGTGAAAAATACATTTTGACCAGACCCAGAAGCAGAAGTGATAGCACTATCCCCAACAACCCTAATGGCAACGAACAGATTTGTGTGTGAAGTATGCAACAAAGGATTTCAAAGAGATCAGAATCTACAACTTCATAGGAGAGGGCACAACTTGCCATGGAAGTTGAAACAAAGAAACAGCAAAGAAATAAAGAAAAAGGTGTACATTTGTCCAGAAGCTTCTTGTGTTCATCATGATGCATCAAGAGCACTGGGAGATCTTACTGGAATCAAGAAGCATTTCAGTAGGAAACATGGAGAGAAGAAATGGAAATGTGATAAATGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATTTGTGGCACAAGAGAGTATAGATGTGATTGTGGGACTCTATTCTCAAGGTGATCCTTTATTTCTAATTTTTTACTTCCAAGATTATAACTTATTTCATTTGTCACAGGAGAGTATTCATTTTTCTTCAACGGACAAATTTTCAATCATACTTCAGGGAAAAACTTGTTTCAATTATAGATCCGGTTTGAAATTTACTATATAGATAGGCCTCGTTTTTTTTTTTCCTCCCGTCAAAAATTACTAGTTCAAGTGTAAGTGCTATGACATTCTAAATTGAGGTTCAACAACTTGAATAAAATACCCACTTATTGTTTTAAGAAAAAAGGATAGACCTCATTTTTACGAGTTCACAATTTTGTCCTTTTACACTTTTAAAGTGGGCAAACGCAATTTCTTTTTTAAAAAATAAAATATGTTTGAGCATTTTTAAAATGCACAATTACAAATTTATAATTTATGCTTCCACACTTCAAAAATGCTTAATACAAAAGTTTAGCTATGAAAGACGAACTTATTTTTATAATGTGTTTCAAATTGATTCTATTATTGAAATATAAGTATTTTTTGAAGTCTAATTTGAAAACTTGTGCATCAACAAATTTGATGTTTCTTTCTATGTTCATTTGAACCACGACAATGGATTTTAATAAGTAAATTATTGTTATTAAACAAAATAATATTGAATCGTTATGATTTTATGGATACATGTGCACAATATTATAATTTTTGTCTTGCTTGGTTAGTACAGAAAAACATAAATGATTCATAACATTTTTTATTTTAAAACAAAATATAAATCAGTCTAATTTCTATCAAATATTTACTCCAATATTTTAATTGGGCTTCATTGTAAATTCAATCAATTTGCTGCTTTTACAAAAAAAATTCAGTTGTCACATGACACACTCATATGAAAAATTCATAATCAAACTTTATAAACAATGAACTTAGGCATAAACTAATTGCCTACATGAAACTCATAACGGACCATATAGTCGAACAGGAAGATCGAGGCAGAATTTTCTCTATACCCCAAGCTAGAGGAGCTAAAATTTTGGGTAAATATTCCCCGAAAGGTAATACTGTAGAAACTCATAAACTGATATGTGCATGGTTCTAAAAAATAACAATTTATTAAATGCTGGATGCACTTAACAAGTCATGCAAGAAGATAAGCATGTCTCTATTTATAGATCTCAATTTTAACTATCCACTTGTCCTACATACATCTCAACCATTGATTTAAGTATCATCACTACTTTTTCTTATAACACAGTGGTTTCCAAATTTTAATCATCCATTGTGATGGATAATTGTGTTGAGGTTTCAGGGTAGACTTCATCAGAATTTACAAGCATAAGGTCAATTGTTTAGAAGAAGAAAAAACAAAGTACCCCAATTAGTTTGTTTGCACTAGATAATTTACTCGGAGTATGTGCGGAAAGTTTGTTGGGTACTTCATTAGAGTTTACAGACGTATGATTGGTACTACGAGATTTCAATTTGTGCTTCTCTTTCTATATGTATGTATGATGTATGTATGTATGTATGATGTATACATGTATGTATATATCCTCACTTATTTATCTTCCTGAAGTCTTCCTTTGTCCTTATGCGTTAAAATTTAAAGATCAAAGTGAATTTCTATAGATACATTATCTTCATTAGCAAGATTACCTATGCAAAATTTGAAATAATTCCGGCACTTCTTGCCCCTTCAAAATAATGTTTCAAATCGACAATAAAAAATATATTTATGACGATTCATACTAAATTGCAATTTCAAAAAAATAAATATGAAATTAATTCAAATTTTGTGTAGATGATCTTGCCAATGAACGTAATATATCCAAAAAAATTACTTCGGTCTGGAATTATTTTACATAAAAAGACAAAAGAGGAGATTTATAGGTACATAATAGGGGATGTATGTATGTGTGTGCGCACATGTAAAGAAAAAAAAGGAAAGGATCAAGATTACCCTTGCATCTTCTTCACTTTTTTACGCAAAAAAAAAAATGGCGCTGGATCAAAATGTTTGTTTTAGATATGTTAATTTGTTAGCGTCATGTATGCAAAATTTTGAATCATTTTAAAATATATAATTTTTTCAAAACCACAAGCTAATATGAACCGTTGAAAAACATTTGATTGAACCACCAAATTGAGAAATAAATTCGAAGAGGTTAAATATTCTAAAATGATTTAAAATTTTGCATAGATGATCTTGAAAATTTTTTTTCCATAAAAAGATGAAGTGTTTGTTTGGTTTTTGTGGGGGGTGGGGGGGGTGGGGGGGGGGGGTGGGATGGTGTTGGGGGTGGTGAAATTAGAGGGGATCTCACATAATTGTGACGTTTACTTGTTGCATCTAATCCAACAGTTAATATCAAAAGACAGGACTATGATTGAGTACATGTGCTTTTATAGTATATGGACTTCACACTTGAAAATGGAAGTATGTATATTTTGTTGAATACCTTAAGTGTGAAAATGATGTAGTATCTCGACTCCAGTTATCTGCATGATATCTTTCCTTTAGTAAATCCATTTGTATTACTGGATACCTGTAGGGATAAATGCATATTTTCTCAACAGTAAGTATAAACTTTGTTTCAGCTATGCTTTTTCATTTTTTCTTATTTAAATCAAAGAACATATTAACTTTTTGATTTTCCCATTTTAAATTGCGTAGTTTATACAGCGTAGAAACAATTATCACAGTGCAGACACTATTTTTTCATAGAACCACATCATTTTGCCCAACACTTTGGAATTTGAACAACTTTGTTCACTTTTCTCATTTTGTATTTACTCTACTAGATGCTTTCTCAGCTGAAACAATGCATGCCATTTCTGTATTTTTGGCAGGAGGGATAGCTTTATAACTCACAGAGCATTTTGTGATGCACTTGCAGAAGAGAGTGCAAGGGCAAATTACACAAACCCCCCTACCTTACCAAACACCAACAGTCACCCCCTACTCTTCCCTCAAACAATCATTGCGTCACCACAAATGCCATCTCTTGACCACCAAATCAACAATCAATTCAGCACTACTACACAACTGATGAAAAGAGAAGAAAACAACAATGAGCTTAACCGCATCAGTACTCAAGATATCCCACCTTGGTTAGAATTTTCACAAAGCCAAAACCCTACTCAAATAACTGACAATAACATAAGTGCTCATACCATGCAAGTGCAACCTTCTCCTCATATGTCAGCTACTGCATTGCTTCAAAAAGCAGCTCAAATGGGGGCGACTATGAGCACAAATGTGTTTGCTTTTGGCAATTCATTTAAAGATGGCACAAATGGGAGTAATAGTGTGAATGATGGAATGACACGAGATTTTCTTGGGCTTAGAGCGCTATCTCGAGGAGATGTGATACTTAATATGGCTGGGCTGGATCGATGTATGAGCTCATCCACGTTTGATCGTGCCCAAGAGAATGATACTAATAATAAGAGTACATGGAACTTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010242235.1	1.7e-106	PREDICTED: protein indeterminate-domain 11-like isoform X2
Swissprot	Q9FFH3.1	1.4e-86	Protein indeterminate-domain 8
trEMBL	A0A8K0HXX9	3.2e-107	Protein indeterminate-domain 7

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G55110.1	50.68	4e-102	368	AtIDD7;IDD7	indeterminate(ID)-domain 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g468275	AT1G55110.1	444	129	14	12	384	18	442	50.68	4e-102	368
g468275	AT3G50700.1	366	112	6	14	338	4	351	53.28	8e-98	354
g468275	AT5G66730.1	204	36	2	14	217	4	194	75.98	2e-93	339

Ortholog group

Species	Genes
Allium cepa	g468275.t1
Allium fistulosum	AfisC2G04250
Allium sativum	Asa6G01862.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12171.5	zf-C2H2_jaz	Family	84	106	22.8	7.3e-05

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13210	FUBP; far upstream element-binding protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network