result

Gene information

Detail information of g468714

Location

Gene	Chr	Start	End	Strand
g468714	Scaffold_84218:HRSCAF_467304	922193	926848	-

Sequences

CDS

Protein

Gene

>g468714.t1
ATGAATAATGGCAACTTTATGTTTTTTGGTATTGGTAACCAAGGACTCGATCTAGGGTTTGGTCAACATTCAAGTGGTGTAGGGACTGCTAGGCCTTATCAAGCACTGTTGCAAGGGGGAAGTAATGTAGATAATGGAAGAGGAAGGATGGTTGCGGTTGGAGATCAGGGTATGAATAATGGGTTGATGAATGGAGTACAGGGTTTGGGTGGAGTAACAGTTGAGACAGTTAGGTCCCCTAATGTGATTGGGAAGCCTAATGGAGATCTATCATCATTATGGCATGATCTGTATAATGTACTCATTTCGGGTACGAGGGGTAGGAAATGTAGTGGATCAGTGGAGAAGGTTGTAGAGAGGAGGCAGAAGTGGATGATTAAGAATCGTGAGTCTGCTGCTAGATCACGAGAAAGGAAACAGGTAACCTTTAATGTATACCTTTTGCACCAGTTTCAAGAGATTAAAATATGTTAATAAATGAATTTTTCAAAACAAACCAGATGTTCTATTTGAATATTCGAATATTTAAACAGAACATTTGTAACCCCACGGGATTCATCAGTGGGAAAGTTGCATAATTAGCTAACCAAGGTTACAGGTTCGAATCTCGCATCCGACAACCATTGTCACCAGCCCTTTGATTTGGAACATGTTTTAGGGGTCCATTGCATACTCCTTCGGGTTTTATAAGCGGAAGCTTGGTTATCTAAGATATCAGAAGGAAATAAATAATTGAACGGATGAATAAATCTGTTGCAATTTAGCAACATCTATAAGTTGGTAGTAAGAAGCAAATAGAAATCAAATTCACTAGAATATGTGTCATATGAAGCATCCTAGTCACAAAAATTTTCTTTATGCTATCAATATTCTACAAGTGCCTGCATTTTTAATTTTACTCCTCTTATCTTATTAGGCTTATACCATGGAGTTGGAAGCTGAAGTAGCCAAATTGAAAGAACAAAGCTGGGAATTGGAGAAGAAACAGGTAGCTTGTTCCTGAACTGGCAAATATTTAGTGGCATCTGCAAGGAAGTTAGTAGTTTATATATGAAACTTTGAACTTTGTTGTGCAAAAGCTCAATGAACTTTTATAGCTTCTATGAGCCGCTGTATATGCATTTTATGTTGGAATATGCTCTAATTTCGATATGTTACTTCAATTTTGCAGGCTGAGATCATGAAAACACAGAAAAATTAGGTACTTATTTTACCTGTTCGCAACATTAGTTTTGGTAGTAATTTCTGGTAGTAACTCTTGAATAAATATATGTTTAGCCTCGTCTTTTTCCTATTTATCTCACATTTTTGATTTTTGGAACTTTATTTGCTTAGAATATGTGATGCTAGATGGATTCATATCCAACCCTGTTGCACAATATAACTCCATGTTTAAATAGAACATACATGTTCATACTTAGTGCCTAAATTCGAGCTTAGATATAAATGTAAAACAAAAATGTACAAAGTTTAGATGAATTAATAACTCGGTCTCTGTCATCTCCCATGAGGAAACAGTTGGCAATGGAATGCTGAGATTGAAAAAGTTCTTAATTTGATCCATGAAAGGATTAGTAAGTCTCAAATCTTGCTTTTTTGCAAGAGCCACAAAAAGACCATAGAATAGTGCCTCAAAGTCTGAACTGAAAATACCAATTCCTTCATGATGAAGGAATAAATACCATGTTTCTACGAAGGGTTTACATTTCTGTTTCAGTTTATGGGATCATTTAAAGTTTCAAAATTTCAATTCCTTCTCGAAAATTGCGGATTCGGATTTCTTTATTTTGCGATACATTTTTATGTCTTAACGAATAAGAATATTTAATAAGCATAATTAACAACTATAATATTTTGCAATTTAGAAGATTGGGTTGAATAGTTGTAAATCTAACAAATATATTTCCATAGAATCCAATATCTCAAGTTGTAATCTACAGACCTACTGTCTGCTAAATTTGGTCTGTAATCACTTGATGTATAATTTAATTAACAAAAAAAATCAACCTAAAACCCAAGTACAAAACGAAACAAACTATTTTCTTTTGAAATCATAATATCTCTTATTCCATCATTTTCATCTCATTTCAAATCCTAAATCATGCTAAATGTGATAGGATTACCTACTTGATATCAACTTCAAAAAATAAAAAACGATAAAATGATTACATGCTCAATGCTGCATGATCCAACTCGAATCCAATCGAATTCTTGTTTTACTATTGGTGGGAATCGATTATTTAAGAATAACCGGGGATTTCGGCATGTTGGTAGAAATCTTGAGCTTTGGTTTCTGCTATTGCATTAGTCAACTTCATTAAAAAAAAATCGAACATTACGAGCTATATATCCAGCTTCCTCCATCTCCATTTAGATTTAAAAAAATAAACAGAAGTAACATGGGTATAAATGGAGGACCACAAACACAGTGGTAAGAGTCTAAGTTATTAATCTGGATGTTCCGTGATTGAATCCCCTTGGCATCAACTATGAATTTTTATTATAAGAAATGGTTTGGGACAAAGTTCCAAACTTTTTCTTAACATATATGCACGTAGGGAGAAATAATAGTAAGAACCTCCACCCCCTCCCCACCAAATACCCCCAATCCCCTAACCACCTCCCCTCTCCTTTCTTTTCTATGACTCCCATCTTCTCGTAACCACTTCCTCATCTTCTAAGCAAGATAAAAGAGTATATTTGAGTGCAAATATGATCCTGTACCAGCTACCATTATCCTAGTCAGACACCAAAGAAGTCATGATTTTCAATATATACCAATATAGGGGGGAAAACATGGTAGCGAAGAGCGTAATCAACTGATACAACCAACGTAATCAACGTTTATGTGAACAATCTCCTATAATTGATACAACTGACATAATCAATTCAAAAAAAGCATAGCAAATGCCATGTTTTTTTTCCTTTCTTAAATACACTTATGTATGTGCTTTTTTTTGCAAAACTGTAAATATTATTACGTCTGTTTGTGCAAAATTGTAAATCATTTAAACTTTTTCCATCGAAATTAATTAAAAAAATACGATTCTCTTTCTTGAATCTCGACAGTATATATTCCAAATTGTCTTCCAATTAAATCATTCTTCAAAATATACAGACACAATACTGTGGTTATATTACTTGTGCATCAATTAGTTTCCAATGTTTGGATAATGCTTGGATTATCTATCGGCCTGTGTTTGTTTTGTTATTACTTCACAATTTTTGGTAGGTTAACTCATTGGCATTTAAGATCTGTTATTTCTTTCTTGTTTGTGCAGGATGAACCCATTTCAAGTATGTACCTTAATTTGTTACATGATATTTGGAAATTTGCCCTCACAAATATCTCAAAGATTTCTACATAGTAATGGTATGGCAGAGGGTTGTGAAGTTGTCAAGATATTTCGAAGTTGTCAAGGTATAACACTGTAATTTGAAATGGTACGGCAGAGGGAGTAGGAAGTGGCAGCACAGTTACTGGTGTTGGAAAATATCTCAAAGAAATAAACCCCAATGACAAGGTATAAACGCTATAATTAGTTAGCATAATTCAATTATTATAGAGTGATATCATAGTTTGAATCATGATTCATTATCAAATATTGGTCTTAGATATATGGAGTTGAACCAGCAGAAAGCAATACACTAAATGGAGGAAAACCAGGTAATCAAGCAATACATACATGATGCATAGTTGAAATTTTTTAAAGCCAGTCTTCTTTTTTACACTGGAACTAAAGATTCTATAACTCTTGTTCATCGACTAACATTGATTCTGCTAGGTCCTCATCACATTACTGGTAATGGCGTGGGATTTAAGCCTAGTATCCTGGACATGGATGTGATGGAAAAAAATGCTTGAGGTATTATTACCTTTCTAAAATTTCATTTTGATATACTAGAAATGGTGCCTTTATGTCTCAGGAAACTTTCTATGTCATGCTCTCTAAGAGTATCCCAACTTTGATCCTCTACCAGAGTAGATGATATCAGTCCAATAATATGAATCATAGCCAGTGTTGTTTTTGCAAGCTTATACAACTACATATAAATCACTGCCGGTGTTTTTATTATAATAAACTATCAGGTTTCCAGTGATGATGCAGTGAAGATGGAAAGAGAGCTGGCACTGAAGGAAGGACTTTTGGTAAGTAATCACTACCAGTGTTTTTAATTTATATTAATTTTTGAATTCTATTTATTTAGCTATTAGTTTTGATATGCATGGTTTTGGTCACAAATGTATTTTTGTAGACGGGTCTGGAAGTCGATTCTAATGCAGTTGCTAAAGTCATTATGGAAGAGTCGCTGATCATTTTGAAGGTGTCAAGTCTTTGGTCGAAGTGGTTGGGGTTAATGGAAAATTTTCCAAAGAGATCTGTAAAGCTTTTCTCATTATATTTGGTGTACAAATATTTCACCTTATATTACAAATGTAACCAAAAATATTTCAGTATCCCACCTCAACAATTTGGTACCAACCTGGGTGATATTTCTGTGGTCGATAAACAATTTGGTACCAATCTGGGTGCTACTACTAGGTCGATAATTGAAATTGGTTAGATGATATGCACTTGAAATGGAGATGGGTCAGATCATTGCGGTAGTCTTCAACCCATTGCTACAGTAGCCAATGCAGATTGTGGTCCATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020277247.1	1.1e-31	bZIP transcription factor TRAB1-like
Swissprot	Q9M7Q4.1	8.0e-22	bZIP transcription factor 36
trEMBL	A0A5C1YVF3	6.5e-29	Putative ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G45249.1	55.91	3e-26	115	ABF2;AREB1;AtABF2;ATAREB1	abscisic acid responsive elements-binding factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g468714	AT1G45249.1	127	45	3	48	165	259	383	55.91	3e-26	115
g468714	AT1G45249.3	138	45	4	48	165	259	394	51.45	1e-23	106
g468714	AT4G34000.3	121	49	2	50	165	304	419	51.24	7e-22	100

Ortholog group

Species	Genes
Allium cepa	g121282.t1; g18824.t1; g342675.t1; g425092.t1; g468714.t1
Allium fistulosum	AfisC4G00515; AfisC4G02054; AfisC5G00998
Allium sativum	Asa4G00594.1
Arabidopsis thaliana	AT1G45249.1; AT1G45249.2; AT1G45249.3; AT1G49720.1; AT1G49720.2; AT3G19290.1; AT3G19290.2; AT3G19290.3; AT4G34000.1; AT4G34000.2
Oryza sativa	LOC_Os02g52780.1; LOC_Os02g52780.2; LOC_Os06g10880.1; LOC_Os06g10880.2; LOC_Os06g10880.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00170.18	bZIP_1	Family	120	169	41.7	8.1e-11

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001101	P	response to acid chemical
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009414	P	response to water deprivation
GO:0009415	P	response to water
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009755	P	hormone-mediated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032870	P	cellular response to hormone stimulus
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071215	P	cellular response to abscisic acid stimulus
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071396	P	cellular response to lipid
GO:0071495	P	cellular response to endogenous stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0097305	P	response to alcohol
GO:0097306	P	cellular response to alcohol
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1990837	F	sequence-specific double-stranded DNA binding
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14432	ABF; ABA responsive element binding factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network