result

Gene information

Detail information of g469603

Location

Gene	Chr	Start	End	Strand
g469603	Scaffold_84341:HRSCAF_467427	39783	41064	+

Sequences

CDS

>g469603.t1
ATGCAAAACAAATTTTTTTCCTTTCTATTTACTCTAAGTTTCTTTGTTTCTTCTAATCATAGATTTAAAATTTCTCCTAAGTATTTTGCATTTTGTTACAAGAGTCAAGCCAAAAGAGAAAGTACCACCAGTCTACCAGCAAGTTTCTCCTTGGCAAAATTTCTAGACATTATGCACTATTATTGTTCTTGTTTTCTTCTTTTTTGTACAAAGCCTCACCCACAAATTAACCACAAAAATTCTCAGACCTTTTTTTTTAACACAAAAATGGATCATCCTTCTCATGAAGTAGAGATCCCAATGCCACTAAACAGCAATGCTTATCTAGCTCAAAGCCATGAAAACAACACTCATTCAAATGAAGAAATGACCCATCATCACAATAGCATCGTAAAGAAAAGTCCTTTATTGGTGAAATATCGCGAATGCTTAAAGAATCATGCAGCTTCAATAGGTGGAAATGCGACTGATGGATGTGGCGAGTTCATGCCTAGTGGCGAAGAAGGAACTCTAGAAGCTCTGAAGTGCTCAGCTTGTAACTGTCATAGAAACTTCCATCGAAAAGAAACTGAAGGCGAAATTCCCAACTCATCCTTTGACTATTTCAGTCATTTTAAAAGAGAGAAAAAATATATAGGCACAAGTCATCATCATAACGGTGTTTTGATACCTAGACCAACTCCTCATAACATGATAATGCCGCTAACAATGCAACAGTCGGAATCCGATGAAATGGAAGGATACCCGAGAGCCCCATTTGCAAAAAAGAGGCATAGAACTAAGTTTAGTTCTGAACAAAAGGAGAAAATGCTTGCATTTGCTGAAAGAGCCGGATGGAAACTTCAAAAGCAAGAGGAAAGTGTAGTGCAACAATTGTGTCAAGAAATTGGAGTTAAAAGGAGAGTTCTGAAAGTATGGATGCATAACAATAAGCATAATTATGCTAAGAAGACTTTGGATCATGAAGGTACTGATAACCACACTGCTATTACTGATTCCAGAGAAGGGTTTTGA

Protein

Gene

>g469603.t1
ATGCAAAACAAATTTTTTTCCTTTCTATTTACTCTAAGTTTCTTTGTTTCTTCTAATCATAGATTTAAAATTTCTCCTAAGTATTTTGCATTTTGTTACAAGAGTCAAGCCAAAAGAGAAAGTACCACCAGTCTACCAGCAAGTTTCTCCTTGGCAAAATTTCTAGACATTATGCACTATTATTGTTCTTGTTTTCTTCTTTTTTGTACAAGTTCCAATCTTGTAGTCTTCTAAACCAACACAAGTAACTGTTTCAAGTAGTTTTTTTTTCTTGAGTTGTTCTAAAGTCTATTGTGGTCTACCAGTTGTATTTCTTCTTTTCGTTATGGTGTGAAACAGCAAACGAGTTGAAGAAGATTGAGGTTATCCAGATAAGGTTCATTATAATCCCATAGTTTCCATTTTTCTTTGATTTTTGCCTAAAATTATTTAAATAAAATAGGCAAGTTGGTCTTGATTACTTTTGCTTAATCATTTAGAGCCTCACCCACAAATTAACCACAAAAATTCTCAGACCTTTTTTTTTAACACAAAAATGGATCATCCTTCTCATGAAGTAGAGATCCCAATGCCACTAAACAGCAATGCTTATCTAGCTCAAAGCCATGAAAACAACACTCATTCAAATGAAGAAATGACCCATCATCACAATAGCATCGTAAAGAAAAGTCCTTTATTGGTGAAATATCGCGAATGCTTAAAGAATCATGCAGCTTCAATAGGTGGAAATGCGACTGATGGATGTGGCGAGTTCATGCCTAGTGGCGAAGAAGGAACTCTAGAAGCTCTGAAGTGCTCAGCTTGTAACTGTCATAGAAACTTCCATCGAAAAGAAACTGAAGGCGAAATTCCCAACTCATCCTTTGACTATTTCAGTCATTTTAAAAGAGAGAAAAAATATATAGGCACAAGTCATCATCATAACGGTGTTTTGATACCTAGACCAACTCCTCATAACATGATAATGCCGCTAACAATGCAACAGTCGGAATCCGATGAAATGGAAGGATACCCGAGAGCCCCATTTGCAAAAAAGAGGCATAGAACTAAGTTTAGTTCTGAACAAAAGGAGAAAATGCTTGCATTTGCTGAAAGAGCCGGATGGAAACTTCAAAAGCAAGAGGAAAGTGTAGTGCAACAATTGTGTCAAGAAATTGGAGTTAAAAGGAGAGTTCTGAAAGTATGGATGCATAACAATAAGCATAATTATGCTAAGAAGACTTTGGATCATGAAGGTACTGATAACCACACTGCTATTACTGATTCCAGAGAAGGGTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ABY61029.1	1.4e-69	zinc finger-homeodomain protein 1
Swissprot	Q9M9S0.1	3.9e-53	Protein FLORAL TRANSITION AT THE MERISTEM 2
trEMBL	B0LK18	9.9e-70	Zinc finger-homeodomain protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02540.1	54.72	7e-61	231	ATHB21;HB21;ZFHD4;ZHD3	homeobox protein 21

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g469603	AT2G02540.1	212	72	4	129	318	76	285	54.72	7e-61	231
g469603	AT1G14440.2	249	90	9	100	326	54	290	50.20	1e-57	220
g469603	AT1G14440.1	249	90	9	100	326	54	290	50.20	1e-57	220

Ortholog group

Species	Genes
Allium cepa	g469603.t1
Allium fistulosum	AfisC2G08713
Allium sativum	Asa6G00871.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04770.9	ZF-HD_dimer	Family	138	190	103.7	4.3e-30

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0006790	P	sulfur compound metabolic process
GO:0008152	P	metabolic process
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006082	P	organic acid metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0046983	F	protein dimerization activity
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009648	P	photoperiodism
GO:0009791	P	post-embryonic development
GO:0009987	P	cellular process
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0016143	P	S-glycoside metabolic process
GO:0019748	P	secondary metabolic process
GO:0019757	P	glycosinolate metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0022414	P	reproductive process
GO:0048571	P	long-day photoperiodism
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043436	P	oxoacid metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0044281	P	small molecule metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048573	P	photoperiodism, flowering
GO:0048574	P	long-day photoperiodism, flowering
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050896	P	response to stimulus
GO:0061458	P	reproductive system development
GO:0071704	P	organic substance metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901135	P	carbohydrate derivative metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1901657	P	glycosyl compound metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network