result

Gene information

Detail information of g473895

Location

Gene	Chr	Start	End	Strand
g473895	Scaffold_84846:HRSCAF_467932	225174	227600	-

Sequences

CDS

>g473895.t1
ATGCAGCAATCATTCCATTTCTTGTTGTTGCTCTTCATCGCCATCGTCGTCTACTACCTTTTTCCAAGTAGTAATGCTCAGCCGCCTCTTTTTTATTTCTCTTCTGCAAATATATCAACAACATGGATAAACAATCAGTCAACAAGATACATCCTCCTAATAGATGCATTTAACCCATTGTTTGGTTGCGGCTTCATCTGCCCTGGATCTGTCTGCGATTCCTTTCTGTTTTCCATCTCCGTAGGTGGCTTCAACGACGATCCACAGATAGTATGGTCGGCAAACCGTGACCGACCTGTTCGGGAAAATGCCACATTGGAATTTTCCCATAACGGGAATTTAGTGCTGCGGGATTTTAATGGCACTACAGTCTGGTCTACTAATACTTCTGGAAAGTCTGTGGTTGGTATGAAGTTAAACGAATTGGGAAACCTTGTGCTTTTTGATGACAAGAACACTACAGTTTGGTCATCTATGGACTACCCTACAGACTCTTTGGTTCTCGGTCAAACGTTGAGACAGGATCAACGTTTGACAGCGAACGTTTCTGTTACCAACTCAAGTCGAGGTCCATTGTATCTTACTGTTGTTAGACATGGTATTGAGGCATTTGTTGGTTCACAAATATACTACGGGCAGTATACTAATGGCTATGAGCAAAAGAACTCTACTTTTGTTTCATTTAAAAATGGAAGCTTAGACTTAATTGATGGTTCTGTTGGTTGGAGTGTACCATTACCTGTGGCAACTTCTGTTCAGTATATGCAACTTGATTATGGGGGACACTTGAGACTCTATGGATTGAAAGATTTTGGGTGGGTTCTTTTAGGAGATGTTTTTCAGATATCCAATGATGACTGTGGATATCCTACTGTTTGTGGTAAGTATGGAATATGCTCCAATGAACAGTGTACTTGTCCTGATTCGACATACTTCACGCCAATCAATGAGAGGAATCCTATATCCGGATGCACGCCCTCTACTGCTATTTCATGTGAATCATATAAAACACAACAATTTCTATCTCTCCCTAATGTGTCTTATTTCGGTCTTGATTATGGTATGAGCAATCAACATCCATTCATAGATTATGTTATGCCTAATTCAACCGAGGAAACTTGTAAGCAAGCATGTTTGTCAAACTGTTCTTGCAAAGCTGCATTTTTTCAGTACGATACGAATGCTTCCAATGGTTACTGTTATTTGCCACAGGAATTGTACTCATTGAACATCAATATACCCATGAATAGAGGCTATAATTCATCTGCATTTATCAAAGTGCAATCATCCCCCGTTAAAAAAGTTAGCATTGGAGTTATAATCGCTGCATGTGTTGGATCTGTACTTTCTTTCTTCCTTGTAGCTTTATGCGTCATTGCTCTTGTAAGGAGAAGATATAGCTATAGAGAAGATGAGGATGATGATGAATTCAATACGTTACCAGGACTACCCACAAGATTTGCCTTCGAAGATCTCAGGGTTGCTACTAACGACTTCTTAAGAAAACTTGGAGAAGGCGGATTTGGTTCTGTTTTCGAAGGGACACTGGTAGACGGCACTAAGATAGCTGTGAAAAGATTAGATGGTGTCGGTCAAGGTAAAAAAGAGTTCTTAGCCGAAGTTGAAACCATTGGTAGGATTCATCATTTACATTTGGTAAGGCTGGTTGGATTTTGTGTTGAGAAGTCGTATAGACTTTTAATTTATGAGTACATGCTTAATGGGTCGCTCGATAAATGGATTTTTTACAAGGACCATGATACTGTTCTTGATTGGCAAACAAGGCGTAAGATCATAACAGATATTGCCAAGGGATTAACATATTTGCATGAAGAATGTAGGCAAAAGATAGTCCATTTGGACATTAAACCTCAAAATATATTATTGGATGAAAACTTCAACGCTAAAGTTTCTGACTTTGGATTAGCTAAACTTATCGATCGAGACCAGATTGAAGTAATGACAAGAATGAGAGGTACGCCTGGATATCTAGCGCCTGAATGGTTGACATCAATCATAACAGAGAAAGTCGATGTCTTTAGCTTTGGCGTTGTAGTACTTGAAATTGTATGCGGAAGAAGGAATTTAGACTACTCAAAAGATGAGGAGAACTTCCATTTAATTAGTCTATTGCAAAGAAAAGTTGCAGAAAATAAGCTAGTCGATATGGTAGATTGTCGGTGCACCGACATGCGGATCCATATCGAAGATGTTATAATGATTATGCATCTTGCAATGTGGTGTCTACAAAGCGATATTAACAATCGACCGTTAATGTCTGTAGTGATAAACGTGTTAAACGGTTCTATGGAGGTGGAGACTAATTTGGACTATAATTTCGCAAACCCAACTCCTTATGTGTCTAGAAACGCAAATATTGTGGAATCCGTTCAACAAATACCATCGACGCTATCAGGACCAAGGTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008791435.1	4.7e-241	LOW QUALITY PROTEIN: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
Swissprot	Q8RWZ5.1	6.8e-112	S-domain-2 (SD2) receptor kinase 5
trEMBL	A0A8N4F5E6	1.7e-237	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32300.1	36.91	2e-124	444	SD2-5	S-domain-2 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g473895	AT4G32300.1	783	390	20	42	772	40	770	36.91	2e-124	444
g473895	AT5G35370.1	788	421	28	58	772	54	809	33.25	2e-98	357
g473895	AT2G19130.1	776	411	26	64	786	48	777	34.28	8e-96	348

Ortholog group

Species	Genes
Allium cepa	g273767.t1; g428730.t1; g473895.t1; g509784.t1
Allium fistulosum	AfisC4G03037; AfisC6G00047; AfisC7G02380
Allium sativum	Asa0G01171.1; Asa0G01626.1; Asa0G02323.1; Asa0G02600.1; Asa0G03659.1; Asa2G06552.1; Asa3G02984.1; Asa3G02985.1; Asa3G02986.1; Asa3G02987.1; Asa3G02988.1; Asa3G04544.1; Asa4G01724.1; Asa4G03168.1; Asa4G03173.1; Asa7G07515.1; Asa8G00373.1; Asa8G05976.1; Asa8G05977.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g72810.1; LOC_Os04g23600.1; LOC_Os04g23620.1; LOC_Os04g23720.1; LOC_Os04g23760.1; LOC_Os06g35870.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	89	182	82.1	2.2e-23
PF08276.8	PAN_2	Domain	367	400	23.8	3.2e-05
PF00069.22	Pkinase	Domain	500	760	166.9	5e-49

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network