result

Gene information

Detail information of g475720

Location

Gene	Chr	Start	End	Strand
g475720	CHR5	176004549	176005621	+

Sequences

CDS

>g475720.t1
ATGGATAATTTCAGCAGAAGCCAAGAAGAGGGCATATCCATGCCGGTTCCATTATCGAACTTCAACCCGCAAAACCCTCAAAACCCGATTCGGGTTTCGGCCTTCTCCAGACCCGGAACCGACTTCGGGGACAACCACGATCTGCATCTGGGCAGCGCTCCTCCTGCCCCAGCGGCGCCCAGTCCGGCGTCTAATGTGAGGTACAAGGAGTGTCTGAGAAACCACGCAGCAAGCAATGGAGGTCATGTTCTGGACGGCTGCTGCGAGTTCATGCCCAGCAGCAGCGACGCCCTCAAATGCGCTGCATGCGAGTGCCACCGCAGCTTCCACCGCAAGCACTCCGACGCCGATTCCGGCTCCAGCTCCTACTATCGCTCCAGAGATCGGGTCTCCGTCCCTCTCCTCCTCCCACCTCCTCATCCCGTTCACCACCATCTCCACTCCCATCACCACCAAAAGCAGTTTCCTCCCAGCCCATCCGGCGCTGTATTGGGGTCGTCGTCGATGATGGCGTTCGGAGGAGGGGGGAACAACAGCGGGAGCGGAGCTACAACGGAGTCGTCGAGCGAGGAAGGGTTGAATGCCGGAGGGTGCGAGCCGTTGAGCAGTAGCCACGAGGCAACGCCAATGAGCAGTGCGATGTCGTCGAAGAAGAGGTTCAGGACGAAGTTTTCAGCTGAGCAGAAGGAGAAAATGATGGCATTGGCCGATAAGTTGGGGTGGAGGTTCCAGAGGCAGGATGCAGCTGTGGTGGAGCAGTTTTGCAAAGAAACGGGAATAAGAAGGCAAGTGCTTAAAGTGTGGATGCATAATAACAAGCATTCTATGAGGAAGCAGCAGCAGGAGCAGCTGCAGCATATTATAATTCAGCAGCAGCAGCAGCAGCCGCCGCAGCCGCAGCCACAGCCGCAGCAGGTGATTCCACAGCAACAGTCGCCGGTAGGTGAGCAGGTGCAGCAACAAACGCCAACGGCGGCAGCACTATTTGGGCATGCAAGAACTTAA

Protein

Gene

>g475720.t1
ATGGATAATTTCAGCAGAAGCCAAGAAGAGGGCATATCCATGCCGGTTCCATTATCGAACTTCAACCCGCAAAACCCTCAAAACCCGATTCGGGTTTCGGCCTTCTCCAGACCCGGAACCGACTTCGGGGACAACCACGATCTGCATCTGGGCAGCGCTCCTCCTGCCCCAGCGGCGCCCAGTCCGGCGTCTAATGTGAGGTACAAGGAGTGTCTGAGAAACCACGCAGCAAGCAATGGAGGTCATGTTCTGGACGGCTGCTGCGAGTTCATGCCCAGCAGCAGCGACGCCCTCAAATGCGCTGCATGCGAGTGCCACCGCAGCTTCCACCGCAAGCACTCCGACGCCGATTCCGGCTCCAGCTCCTACTATCGCTCCAGAGATCGGGTCTCCGTCCCTCTCCTCCTCCCACCTCCTCATCCCGTTCACCACCATCTCCACTCCCATCACCACCAAAAGCAGTTTCCTCCCAGCCCATCCGGTAAGAATGACAAAATTAAACTAATTGATACAGTTTTATTTAATTTAACTCGCTTCTTCTTAATAAAGGCGCTGTATTGGGGTCGTCGTCGATGATGGCGTTCGGAGGAGGGGGGAACAACAGCGGGAGCGGAGCTACAACGGAGTCGTCGAGCGAGGAAGGGTTGAATGCCGGAGGGTGCGAGCCGTTGAGCAGTAGCCACGAGGCAACGCCAATGAGCAGTGCGATGTCGTCGAAGAAGAGGTTCAGGACGAAGTTTTCAGCTGAGCAGAAGGAGAAAATGATGGCATTGGCCGATAAGTTGGGGTGGAGGTTCCAGAGGCAGGATGCAGCTGTGGTGGAGCAGTTTTGCAAAGAAACGGGAATAAGAAGGCAAGTGCTTAAAGTGTGGATGCATAATAACAAGCATTCTATGAGGAAGCAGCAGCAGGAGCAGCTGCAGCATATTATAATTCAGCAGCAGCAGCAGCAGCCGCCGCAGCCGCAGCCACAGCCGCAGCAGGTGATTCCACAGCAACAGTCGCCGGTAGGTGAGCAGGTGCAGCAACAAACGCCAACGGCGGCAGCACTATTTGGGCATGCAAGAACTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	RRT50980.1	4.4e-36	hypothetical protein B296_00024177
Swissprot	Q9SB61.1	1.4e-31	Protein MATERNAL EFFECT EMBRYO ARREST 68
trEMBL	A0A444F632	3.2e-36	ZF-HD dimerization-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24660.1	43.30	9e-42	167	ATHB22;HB22;MEE68;ZHD2	homeobox protein 22

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g475720	AT4G24660.1	224	70	7	64	279	45	219	43.30	9e-42	167
g475720	AT2G02540.1	222	99	8	66	279	85	284	41.89	2e-39	159
g475720	AT1G14440.2	229	98	7	66	285	88	286	40.17	3e-38	155

Ortholog group

Species	Genes
Allium cepa	g475720.t1
Allium fistulosum	AfisC5G01772
Allium sativum	Asa5G01659.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04770.9	ZF-HD_dimer	Family	65	114	83.9	6.4e-24

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0046983	F	protein dimerization activity
GO:0042802	F	identical protein binding
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network