result

Gene information

Detail information of g47583

Location

Gene	Chr	Start	End	Strand
g47583	Scaffold_28130:HRSCAF_248271	171279	176034	+

Sequences

CDS

Protein

Gene

>g47583.t1
ATGGGAAACAAAAAGGAGATTATACTCGAAAACATCTCATTCAAGAAACATCACGAAGAACGCATTGATACTAGTTACAAAGACAACAATTTGACTGTAGAAAAGACTCAACTTCTTGAATTTAGCTCACCAAGGCCATTGCATGAACTTGATGCAGCAGCAGTTAAGCTGCAAAAAGTTTATAAGAGCTACAGGATCCGTAGAAATCTTGCTGACTGTGCTGTGATTGTTGAGGAGCTTTGGTTAGTTTTCTTCTTCTTTTTTCTTTCTTTAAGCATTCAAAATCTGCTAATTAATTACTCTTATATCTGGTTAAGTGAATCATTGAAGGTGCTTAAGGGAAAAAAACACCCTTCCATTGCTAGCATTCAAGTGCACTTAACCATCAGTCAATGGCATCTTACTACTTCTACCACATAGATCCAGCTACGTTAATGAGTGGTCTTTTTTTTTTTCTTTTTTTCATTTGTTACATTTATGCCAATCTAATTGTACTGTCAGAAGAAGAAAAAATCATCATAATCATCATAATAGCTAGCTAATTTATCTATACCATCAGACAACCAAATTCAAGTATTGTTTCTATTATATAAGTAGGTATTGATTTATTAAATGGACAATGCTCAAGCAACACAATTTATTTATATTATGCAACTTTTCCCAGATTCATATTTTATTAAGCAGCAGTTAGTCTTGGTTCACCGCGTAACGAGCAAAATAACATACATGAATCTGTTTCCAAAAGTAGTTCTAAATTGGAGTTCTCCACACAAGTACGTATTTTTTTCGTGCATAAATTCTTTGAAAAACAAATATATATGGTCTGACAGGCTTATTGTTTTTTTTTTCACACATGCATCAAGTCATTCAAAAATATATGTGCTCGCATGCATGCGAGGGTAGTAGCTCGTAATGAAACCCGTTGATGTGCACACGCTTGCATGCTTGCCCAAGCTATTATTCGGTGTATTCTGCAAATTGTTCATTAATTGCTTTAAGAAAATGCCCAGATTGTAATCAATTTAATGCCAGGGTTGCAAAATTAGAACTCAGCCTTGGGGAAATTGCACATAATTCACCTGATACATGTATTAAATTTATTTAATTAGTATGCTGTATATAATTTGTATATTTATATTTCGACTTCTCTTTGTGGTAGAATCCTGCTGAGAAGAAGACTATATTATGTGATGAGAAGCATAAAGAGCTGTTTCAGGTTGATTCTTTCAATGGATTTGGCGTTTCAAAGTTGCTTGCTGCTCATTTGACAAGGAAACAGCTTCAACGAAACAAAGCCTTAACCCAAGTATATGGGCAATTTTGTTTCAGCTGTAAGTTAGAATTTTTACCATTATCCTATGATTATCTTAAGTTATTTGTGCAAAAAAATTACGAGATAGGTATACTTACCAATTAGGCTAACATGTTTAAAGAAAGACCAGACATGCATAACGCAATTTGCTCAATCAACCTTTCGTACTAGTAATTAATTTATTGTGCTAATTCTAATCTAAATATATTTTGTCTATTTAATTAATTTGCATTCTAATCAGACAGTTTTGTGATTAGTTAAATTTTGCAACTACAATAATCATAATAGTTACAATAAAATTTTATAATCTTAGTTACGTAATCATAATAATAAAATTAACTAAGTTAAATTAACTAACCATAACAATAAATAATCAAAATTATCACAATAATTAGCACATCCTATATACCCATTGTATAATAACCCATTGAAATATAGATTTGTTTATCTATTTATTTATATGAATGGAAATGTATGAATAATTTTGTTTATCTACTTATATTTTATTATAGTTGTTTAGTACTTTTTGTTGAACACCGATTTAGATAAATTAAGCTCAAATTTCCAGTTGTTTTCATCATTGTAGCATTAATTGGTAAAGCTGTAACTGGGGGAGCATCTTCAATACTACCATTTTGTTAAATTACAAAATGTTTATACAAATCGATGACATGGTATTTAAAAAAAGAACAAAAAAGCCTTTTGTAATGAAATAGCACAACTTTAACTCGGTTTTCTTATAATCATTAGAAAGGGAAACGACCTCGAGTGCAAGCGTCTACACATTGCAATGAATGATGCTTTAAACGTGCATTTGTAAAAAGGTAGCGGCTGTTCATTAAAAATGAATTGTCCCATATGTGCGTTAAAAGATAGTAATATTGAAGATGGCCAAAGCAGAGCAGTCTGACAATAATTATTTGAGAGAAGAAGAGAAAGATTAAGTCGTGTGCATCCCCTCCCACACTTGTACAGTAGTACATACTCTCTTTATCATTGAAACAGTGAACAATTTTAATTATTGGGGGCAGAGAGTAGATATAGGAATAATTAACTAGCGATTTGCAGCTGATAACAAAGTGAAGCTCAAGTGCTCATACATTGACAAACTCAAGCAAACATTGAAAATTAAAAGCGCGAAATCGACTATATTATATACCTGATAAAATTAAGAATGCACCAACGAGGAAGTTATTGGTAATAGAATGTAGAGGAAAGAAGCAAAGCATATGTAACTCATAAGGACGGGAGAGTTGGGGGCATGAGATTTGATTCGGCTAATACGATTCCACCAAAATTCTGTCTGATTTTGGAGAGAGTGGTAATCAGTATTTAATATGATATCTTCACATTATATTACGTAACAAAGATAGTATTCAATTTAATGAGTGATCTTCCTAGAAGCTGAACAGAGATTAGGACAGAGGCATATGTTTGTTTTAAATCATTTATGAGATGATAATATCCATCTTGATCCAAAGTTATGGCTCTACATGATCATAAATAATTGTTGATGAAAAAAATTTAGATTGGAAAAAAAAGTGTTATAAAATTAGGAAGCCGTACAATTTTCCTAATCAATTAATTATGATTCATGGTCAAAACACAGATGTAACTTAAGATCATGGAAGTTGCATGAGAGAAAGTAGGAAGCTTTCCTTTCTATTTCGGTGGGGTTTCAATTTTTTATTTATTTATTAAAGTTTTTATTTTATTTTTAATATTATTGAGTTTTATTTTATATTTGTATGTTTCATATGATTTGCATGTGGAAATTTGAATATGTCAGAGTATCAACATAGGGATATGAGAACATCTCAGTCATGCCTATAGCACCTTCTTGCATTTTGGAAGATTAGCTTTACTTTTATTTTTGGCATTGTAAAATAATTTTAGTATTGAACATGATCTTATATATAATAATTTCAGGAAAGAAACATTTATGTGGTAATTTATTTTTCATAACTTATACTCTTTAAATAATTTTGTGTTCAAATTTACTGTAAATTAGGAGACAAGTCATGGTCTGTGCAGTAAAAAGTACTGTGGTATTAATAAATATTGTCTTCTAACTAGTTCATAAATAAGCACAAATAAGATGGCCTTTTAGTCTACTTGAACATTAATTTGGCTTGGCAAAAGGTTTTAAATTAAGGCTAAATATATTATTTTAAGATGGGATTGTGTCCACGATTAGCATACAATCACTTGTTTAGTACAACTTTGTGTTAGTTTAAGGTGGGATTGAAGACAATCTCTATCCGAGTATTAATTGTATATTGCAATGCAACAGTCTGATGTAGGGTGTTTGAATTTGCAATTTTTGTACTTTTAGTAAAAAGGCTTAAAGCTTTGAAAAATAACAACAAATCAATGCGCTTCTTTAAAAATGTTGTCTTCAGTGCTTTTGATGAAATTAACTTTTAGACTTTCAAAACAAAACAATAGCATAAAAGGCAAAAAAAGAAAATCTATCCATACTTAAAAAAGATCATTTTACATACTTAATTAAGTAATGACTCATTTTACATTAAATAACGGAATAAAACTGCCACTTCTATATATTATATAGTGGGTCAAACTGTGCACAAAAGAACATTTCATCTGTAGGAATCTAAAAGTGCAGAGTACAATAACAGATCAAAGCAAAAAGAGAAAGAAAAGGCTGTTCTTACCATTAGTGATGGCATGGAAGCACCAGCTCTTGCTTCTGGTGCATCTTCAGAGAATATATGTTACAATATTGCAAGAGATGGATCATCTCAGTCTTTTGACAAAGGATTAGAAGTCCAGGTATTCCTTGTCCTAACTTGCATATCAATGAAAATGACAGTTACCATTTTATTTCGTTTTATTTTCTATACAATCATGATATTTTATATACACTCTTATAGGGAAATATAATTCAAGAGGGCCAACAGTTGGGTACTGTACCAATGGTACCTTCTCGAGCCTCAACTTTTAGAGAAACTGGATCAAGCTTTGTTTCACATGCTTCTGCTTCTTCAGACATGCCTTTCAAGGACCACCATCTGAAACAACTTAGAGCTCAGTGTCTCTTGTTTCTAGCATTCAGGTACTCATGCTCAATCATTATCTTCTTTAGTTTTGAATTTATATTAAACAAAATGTACATTTCCAATATCTTTGCCATCCATGACGGGATTTCAGCATTAATATACTAATATAGATCTTACTAAGTGTGCTTATGTTCATTCATGTTATTATAATTAATGGGGTTAAGTCATTATAATGGAAAGTGTGCTTATGTTATTTCATGTGATTACATATTGTTTTGCACTCAAACTTTATGAACATGATTTGAATTAACCTTTACTGCACTTTTCCACGTACAGAAACAATTTACTGCCGAGGAAATTGCATCTTGATATTGCTTTAGGAGACTACTGTCCTAAAGAGGGTAAGAATGTGTGTTATTTATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020269665.1	1.2e-21	chromatin structure-remodeling complex protein SYD
Swissprot	O82645.1	2.8e-12	IQ motif-containing protein 1
trEMBL	A0A5P1EKK3	8.4e-22	Chromatin structure-remodeling complex protein SYD

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G33050.4	67.27	3e-15	79.3	AtIQM1;EDA39;IQM1	calmodulin-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
g47583	AT4G33050.4	55	18	32	86	88	142	67.27	3e-15	79.3
g47583	AT4G33050.1	55	18	32	86	88	142	67.27	3e-15	79.0
g47583	AT4G33050.3	55	18	32	86	88	142	67.27	3e-15	79.0

Ortholog group

Species	Genes
Allium cepa	g140761.t1; g203526.t1; g238592.t1; g238600.t1; g238617.t1; g238620.t1; g4346.t1; g47583.t1; g487137.t1
Allium fistulosum	AfisC2G08530; AfisC3G06573; AfisC7G06212
Allium sativum	Asa8G02998.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02201.15	SWIB	Domain	83	118	26.7	3.5e-06

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0051276	P	chromosome organization
GO:0000166	F	nucleotide binding
GO:0000228	C	nuclear chromosome
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000785	C	chromatin
GO:0000790	C	nuclear chromatin
GO:0000988	F	transcription factor activity, protein binding
GO:0000990	F	transcription factor activity, core RNA polymerase binding
GO:0000991	F	transcription factor activity, core RNA polymerase II binding
GO:0008152	P	metabolic process
GO:0002831	P	regulation of response to biotic stimulus
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003678	F	DNA helicase activity
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0042623	F	ATPase activity, coupled
GO:0003824	F	catalytic activity
GO:0004003	F	ATP-dependent DNA helicase activity
GO:0017111	F	nucleoside-triphosphatase activity
GO:0004386	F	helicase activity
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005524	F	ATP binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005694	C	chromosome
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0016887	F	ATPase activity
GO:0006325	P	chromatin organization
GO:0006338	P	chromatin remodeling
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006996	P	organelle organization
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008026	F	ATP-dependent helicase activity
GO:0008094	F	DNA-dependent ATPase activity
GO:0008144	F	drug binding
GO:0008150	P	biological_process
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009611	P	response to wounding
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009966	P	regulation of signal transduction
GO:0009987	P	cellular process
GO:0010104	P	regulation of ethylene-activated signaling pathway
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010467	P	gene expression
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010646	P	regulation of cell communication
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0010959	P	regulation of metal ion transport
GO:0016043	P	cellular component organization
GO:0016070	P	RNA metabolic process
GO:0016462	F	pyrophosphatase activity
GO:0016514	C	SWI/SNF complex
GO:0016586	C	RSC complex
GO:0016787	F	hydrolase activity
GO:0016817	F	hydrolase activity, acting on acid anhydrides
GO:0016818	F	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0017076	F	purine nucleotide binding
GO:0018130	P	heterocycle biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019438	P	aromatic compound biosynthetic process
GO:0022414	P	reproductive process
GO:0023051	P	regulation of signaling
GO:0030554	F	adenyl nucleotide binding
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031347	P	regulation of defense response
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032101	P	regulation of response to external stimulus
GO:0032392	P	DNA geometric change
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032508	P	DNA duplex unwinding
GO:0032553	F	ribonucleotide binding
GO:0032555	F	purine ribonucleotide binding
GO:0032559	F	adenyl ribonucleotide binding
GO:0032774	P	RNA biosynthetic process
GO:0032879	P	regulation of localization
GO:0032991	C	macromolecular complex
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0034654	P	nucleobase-containing compound biosynthetic process
GO:0034756	P	regulation of iron ion transport
GO:0035639	F	purine ribonucleoside triphosphate binding
GO:0036094	F	small molecule binding
GO:0040029	P	regulation of gene expression, epigenetic
GO:0043044	P	ATP-dependent chromatin remodeling
GO:0043167	F	ion binding
GO:0043168	F	anion binding
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0043269	P	regulation of ion transport
GO:0043900	P	regulation of multi-organism process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044427	C	chromosomal part
GO:0044428	C	nuclear part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044454	C	nuclear chromosome part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0048367	P	shoot system development
GO:0048583	P	regulation of response to stimulus
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0048859	P	formation of anatomical boundary
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051049	P	regulation of transport
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0070035	F	purine NTP-dependent helicase activity
GO:0070297	P	regulation of phosphorelay signal transduction system
GO:0070603	C	SWI/SNF superfamily-type complex
GO:0071103	P	DNA conformation change
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0080134	P	regulation of response to stress
GO:0090304	P	nucleic acid metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0097367	F	carbohydrate derivative binding
GO:0097659	P	nucleic acid-templated transcription
GO:1900150	P	regulation of defense response to fungus
GO:1900390	P	regulation of iron ion import
GO:1900393	P	regulation of iron ion transport by regulation of transcription from RNA polymerase II promoter
GO:1900400	P	regulation of iron ion import by regulation of transcription from RNA polymerase II promoter
GO:1901265	F	nucleoside phosphate binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901362	P	organic cyclic compound biosynthetic process
GO:1901363	F	heterocyclic compound binding
GO:1901576	P	organic substance biosynthetic process
GO:1902494	C	catalytic complex
GO:1902531	P	regulation of intracellular signal transduction
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1904949	C	ATPase complex
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090691
GO:0140097
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11786	STH1_SNF2; ATP-dependent helicase STH1/SNF2	EC:3.6.4.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network