result

Gene information

Detail information of g478818


Location
GeneChrStartEndStrand
g478818Scaffold_85432:HRSCAF_468518526247552753-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAGO33167.15.3e-104MYB transcription factor
SwissprotQ8RWU3.11.2e-55Protein LHY-CCA1-like 5
trEMBLR9YZ623.8e-104MYB transcription factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G09600.147.912e-60 229LCL5;RVE8Homeodomain-like superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag478818.t1
Allium fistulosumAfisC5G04464
Allium sativumAsa0G04391.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain9013445.08.1e-12

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000988Ftranscription factor activity, protein binding
GO:0000989Ftranscription factor activity, transcription factor binding
GO:0001076Ftranscription factor activity, RNA polymerase II transcription factor binding
GO:0001101Presponse to acid chemical
GO:0001190Ftranscriptional activator activity, RNA polymerase II transcription factor binding
GO:0008152Pmetabolic process
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006464Pcellular protein modification process
GO:0006473Pprotein acetylation
GO:0006475Pinternal protein amino acid acetylation
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0006996Porganelle organization
GO:0007275Pmulticellular organism development
GO:0007623Pcircadian rhythm
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009314Presponse to radiation
GO:0042493Presponse to drug
GO:0010038Presponse to metal ion
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009648Pphotoperiodism
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009737Presponse to abscisic acid
GO:0009739Presponse to gibberellin
GO:0009751Presponse to salicylic acid
GO:0009753Presponse to jasmonic acid
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010228Pvegetative to reproductive phase transition of meristem
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0014070Presponse to organic cyclic compound
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016573Phistone acetylation
GO:0046677Presponse to antibiotic
GO:0018130Pheterocycle biosynthetic process
GO:0018193Ppeptidyl-amino acid modification
GO:0018205Ppeptidyl-lysine modification
GO:0018393Pinternal peptidyl-lysine acetylation
GO:0018394Ppeptidyl-lysine acetylation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0019538Pprotein metabolic process
GO:0046686Presponse to cadmium ion
GO:0022414Preproductive process
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032774PRNA biosynthetic process
GO:0032922Pcircadian regulation of gene expression
GO:0033993Presponse to lipid
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0036211Pprotein modification process
GO:0042221Presponse to chemical
GO:0042752Pregulation of circadian rhythm
GO:0042753Ppositive regulation of circadian rhythm
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0043543Pprotein acylation
GO:0043565Fsequence-specific DNA binding
GO:0043966Phistone H3 acetylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0046483Pheterocycle metabolic process
GO:0048511Prhythmic process
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048573Pphotoperiodism, flowering
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:0097659Pnucleic acid-templated transcription
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1901576Porganic substance biosynthetic process
GO:1901700Presponse to oxygen-containing compound
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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