result

Gene information

Detail information of g480012

Location

Gene	Chr	Start	End	Strand
g480012	Scaffold_85555:HRSCAF_468641	463620	465320	-

Sequences

CDS

Protein

Gene

>g480012.t1
ATGGAGAAAGTGAAGAAACAAGAAGAAGGAGAGAAGACCGATATCACTACTAACAATAATATTAAGTCTGGGTTAATGAAAGTTTTGGTTGTTGATGATTCTCCTATTGACCGCATCGTAGTTGAGAGACTGCTTCAAAAGAGTGGAGAATTTTTTGAAGGTATCATTCATCTTCTTTCTTCTAGCAGTCTTCGTTGTGTATGTAATATTAGGTTCGATTGACCATATTATCACTGCTTACAGTTTAAAAAGTTGTATATATACCTGAAGATTGGAATTGTATGCTAGGTGTACTTGAAATTGGTTCATAGATGGTATTCAGATTCTTCGTTTTTTACCAGTAACAAACACTGAATACGTCAATTTTCTATGGTGCTATAACTTTCGCTCCCTCAACTGTTATAAAATTTCTACTTTATGTTACCTTTCAGTGATTGCGGTCGACAGTGGTAAGAAAGCAATGCAAGTTCTTGGTTTAGAAACTGGAAACACTCAATCCTCTAATGCTTATGTAAGAACCTTTGTTGTTTATCAGTTTTTCTTGTTTATAATTAATACATGAGCATTGTCCGTGTCCCTGAATTCATGTAAAGCTTGAGACTATTGAAATGTATGAATTAAATTACATGCAGGAGCAGAATATTGACATAATTCTAACAGACTACTGCATGCCCGAGATGACTGGCTATGACCTCCTCAAGGCGATTAAGGTACTCAATTCTATTCTTTCCTGTTGCTAATTTTTCATTAATCTTGACTTTATAATTGCCAAATATGTTACAATTGTCTGCTGCAAATTTTCAGGAACACAAATGTCCAAAATATATTCCCGTGATTGTTATGTCATCAGAAAATGAACCACAGAGAATATCCAGGTATTTTTTAACCTAAATACAAACAATTTCTTGTACAACTGGTGCCTGTAAATCATAATGGATATTTTACAAGTACATGTGAGTTTTGTAGTGTTAACATACATTTCAGCCATTAAGTTTTAAGCTTTTCGTTTCTTATTATACAAACAAAGATTATTGATTAGAAATGTATGGTTTTAATGGTTATGAACACAGTGTTGATGACTGTGTTACATAATGAGTTTGTTTCCAACCTAATCGATGTTCATAAATGTTAATAGTGATGCAAAATTTAAAGTTGGTTGGTCCCATGAGGTCATACAGAAAATACAGAAATGGACAGTTGCATGTATGGATCAATATGCTGAACTAATAATATTTGAACAAGTGCGTAATATGACAAATATTTTTAATTAGGTTAGATTCTGAAGATCTTATCAAGAAAATTGATCATCACAGTTCAGGACCAGCATCAGCATGATAACTAGTAAACATAATTCCACCTAAAAGTCTTCTTATCCATGACTTATTTTTTTGCCTTCAGTCTCCATCTTCTCTTAAACTCAAGTTTTTGTTTTTTTCTGATCGAAACAAAATAAAACTATATTTCAAAACATTACTTGTATATTTTCATTAACTCGAGTACAATATTTTAAATCATAGGTGCCGTGACATTGGAGCAGAGGACTTCATCATAAAACCTCTTCAAACTAAAGATTTGCAGAGATTAAGAAACTACGTACGAGGACCAAAGGCAGAGTCCAAAAGGAAAATACAGTTTGATGTTGCAAATGAAAGCAGCGTCTCTGAGAAAAGACCTAGGCTCACTGGTGTTGCAGCTGCATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246744.1	3.1e-58	two-component response regulator ORR1-like
Swissprot	Q2HWG4.1	1.2e-38	OsRRA9
trEMBL	A0A5P1E5C0	2.2e-58	Response regulatory domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G57040.1	45.64	8e-32	133	ARR9;ATRR4	response regulator 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g480012	AT3G57040.1	149	70	3	26	165	9	155	45.64	8e-32	133
g480012	AT1G59940.1	137	65	3	21	156	28	160	48.91	1e-31	132
g480012	AT2G41310.1	136	59	2	28	156	11	144	50.00	5e-31	130

Ortholog group

Species	Genes
Allium cepa	g480012.t1
Allium fistulosum	AfisC6G02598
Allium sativum	Asa8G04155.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00072.21	Response_reg	Domain	28	150	82.2	2.6e-23

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005829	C	cytosol
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0022622	P	root system development
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0048364	P	root development
GO:0048731	P	system development
GO:0048830	P	adventitious root development
GO:0048856	P	anatomical structure development
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14492	ARR-A; two-component response regulator ARR-A family	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network