result

Gene information

Detail information of g480885

Location

Gene	Chr	Start	End	Strand
g480885	Scaffold_85612:HRSCAF_468698	97909	100480	-

Sequences

CDS

Protein

Gene

>g480885.t1
ATGTATCCGTTCACTGAAATCCAACTGAAAGAGCTAGAGTTGCAAACGATCATGTTCAATTATTTCGCGTCAGGAATTCCTATTCCTCATCATCTCATTTCACTCTTCAATAGAAGCTTTTATGTTCTCATCGATCCTTTTGCACTCGACCCTAGTAAGTTTCTTTTCATATTTCATTAATTAATACTCTAATTCTTCTCCTTTTTTGTTATCTACAATCTGTCTGTTTTGGTAAATCCCCTTTAAAGTCGTAAATATTTTGGATTGAAATATGTTTATTAGGCTCTACAGTTAAATTCTGAATTTAGTGTTCTAAGTTTGAATGTTTTTTGAGCAAACGAAGGTGTGATCTTTACATGTTGGATCAAATACTCGGGTTCTTGATGTTTTAAATTGCTTCAGAAATTCTGTTTCTTTATTCTTTTTTGCTGTTTGTTTTCTTGTTCTTTTGGAAAAAAAATGCACTCAAGTAATTTGAAATAATGTCAGTGTAATTTCTTAAAAGAATGCACTGTTGCTGTTTCAAAAAAGATTAGTAAAAATGTTCCTTTCGTGCCACGCTGACAAGAGAGTAGTCTATGTTGTAAATATTTTTAGAAGTATGCTTAAAAAAATTATACAAATGAATAACAAACCCATTTGTTTATTCGTTAATAATTTTCATTTTCGGAGAGTAATAATTTTAACTTTTGAAAAGTACTACAACACTTTGTCAATTATTGGATAATTTTGCCATGGTTGGTTTAGAAAAAAATTATTAGTCTATGTATATTAAATTAAAATATTTTTTTATTTGAATATTAGTAGAATCTAAAAACAAGGTACTGGATTTACTTTCAAATATACTATATGTAATTTGGAAAATTTGTTTATGTGCTTATTTATCTATATTTTTCGCTGAGTGGGCAAATTTTACTTTGTATCAATTAGTCTTGTTTTCTTTGAATTTATATAAAACAAGTATAACATATAATTTTATTTTTAAGTTTAAGGACCAAAAGATTCATATATGAAATTAACTGTATATCCATGTCAGACTAAATTTCTTTGAAACCTGTAGCAAACTATACAGCCATTAAGACTAATTGAATTCTCCTGTAAATTTTTGTAACAAATTATCTGTTTTCTACAGTAGCGTAAATCGCATGTATGTGCATCTAATAGCTACAAATATTTACATTTTATTTAGTAAAAAATTTATGTATGAATGTGTGTTATAAGTGCAAAAGCTTTAGTGGTCACGTCACTATTATTTCAAGCGAAGTTGAATTCCGTCGACGAGTGGTTGAAAAGTGAGTGGTAGTGGAGGTTGCAAACGATGGTAAGATCACGTTGATGGATGTAAAAGACACCGTGAAATCTATTTATTGAATTCTCTTTATTAATAGTAGAGATATATGATGAAAAAGCTACTTTTTTTTATTTGGATTGTCACGGAACTAGGTTTTCAATTAATTCTATTAAAATATAAAATTATAACTATTAAACGTCTGTTTGATTATATATACCGATTCGTGTATCGGAGAGGTTGTCATTAGTGGTTGGTTGCCCAGACAATTAGTTTGTTTGTCATACCCTAGTGCCGCCCCTAGTAGCTAGTGTTGCTAATATTTTGTATTCTTGTAAACATATATATAATAAGCCAATATCTAACAGTAAGAAGACATGACTTAAGATTGTATTTACCTATGTAGTATGTATATGGCCAATTATTTGTTTTGCTTTTAATATCTTTTTTTATTGCTTGTAAACTTCTAATAAGCAATTAACAATTATTTGCATGAATATAGCTGACAATCCTACTCAAAACATTATATTGACTAAAATCATGCAACAACTTAATTAACATCTTGAATGCATGAAAAACAAGGCACTATATTGACTAAAAGCAACTTTTATGGATACTAGTATGGACCCGTACTTTGCACACGGGCTGTGTATTGTTGTATACGTTGATATTTTGTTTAAGCCATTAGCTATACAAATTGAAAATTCTTTCATATGGTAGTAATCGTATGAGTGTAGACATGTAAATGTGGAAAGCGAGGGCATTATTTGAATTTAAAAAAGACACCAATTAAATCAGTTCAACAAATTTTCTTTATTAGTTTTAGAGATAATATTAGTTTCCATTATATAACACAAAATGTGTAAAATGATGTTCACAGTGAATGCAACAAAGAAAGTAGAAGAAGATCCAGAGCCATGGAGATGCAAAAGAACAGATGGTAAGAAATGGAGATGCTCGAAAGAAGCAAGCAAAGACTCGAAATACTGCGAAAGACACATGCATCGAGGAAGGAGAAGTTCAAGAAAGCTAGTGGAAATGCATTCTCCTCTTTCCACCACAAGGCCTAGCTTTATCGATCGGTTCCCAAACCCGAACATAATGCTTCGCCTGTATGAACAAAATAAGCATGGTTACGTGGTTGATACAGAGCTTAAGCTTGGCAATGGTGATGGCAGAGTGGAGAAGGAGAAAGAGGAGAGAAAGCCGAGTACTTTGCTTCGATTGTTTGATGAGTGTGTCGATGCTGAAGATAGGTACTCGTTGTCGATTTCCTTCCCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255192.1	3.6e-27	growth-regulating factor 1-like
Swissprot	Q6AWY8.1	2.9e-18	Transcription activator GRF1
trEMBL	A0A5P1FEJ7	2.6e-27	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G53660.1	48.54	6e-23	103	AtGRF7;GRF7	growth-regulating factor 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g480885	AT5G53660.1	103	43	2	2	104	58	150	48.54	6e-23	103
g480885	AT4G37740.1	186	115	2	3	179	164	345	31.18	5e-22	100
g480885	AT2G06200.1	117	43	2	3	101	6	122	47.86	1e-21	99.4

Ortholog group

Species	Genes
Allium cepa	g480885.t1
Allium fistulosum	AfisC3G05663
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	3	33	27.5	1.7e-06
PF08879.7	WRC	Domain	62	104	68.6	2.6e-19

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network