result

Gene information

Detail information of g482708

Location

Gene	Chr	Start	End	Strand
g482708	Scaffold_85884:HRSCAF_468970	273857	275368	+

Sequences

CDS

>g482708.t1
ATGGAAGTAGATATGGATATACTAATTGACAATGGCTTCAACCTATACAAATATGATCAATATTCCGGATGTAGTTCCACATCCACAATCGAAGACGAACACAACGATGGCTATACTTACTTGAGTGAGTGGCACCCTGCAATCAACTGGGATCCTTTATGCAGCGACACAGATATCTTCCATGGCCTAATCGATTCATTGATGATGTGCGATAATAACATAACAGATGACATCAACCATCAAGACCCGCCCTCCTTCAGCATGACCACTAGTGAGGGATCACCGCCGCCTGTCACCGAAGGCGATGACAGAGGGCTGAGGTTGGTGCACTTGTTGATTGCAGCAGCCGAGGCTCTCAAAGGGGCACATAAAAGCCGAGAACTTGCAAGCGTGATATTGGTTCGGCTCAAGGAGTTAGTCTCACCTTCCAGAGGTTCTAGAACAAACATGGAACGGTTGGCCGCTTACTTCACGGAAGCACTCCGATGCCTGCTCGATGTTCCAAGCTCCGTAAGCAAAAGTCACAAAGGAGATCAGCACCAGCAGATGCATCCTACCAATGCCTTGGCAGCGTACCAGCTCTTACAAGACATGTCTCCCTGTGTGAAGTTTGGGCACTTCACCGCCAATCAGGCCATTTTGGAATCTATATCAACCGGTCGTAGGGTTCACATAGTCGATTACGACATCATGGAAGGCGCGCAATGGGCTTCATTGATGCAGGCTATGGTATCAAAAAAAGAAGGGCCACCTCCTCCGCATCTAAGAATTACAGCAATCACTAGATACAATAGTAGCTGTAGAAAGCAAGTAAGTTCCGTTCAGGAGACTGGAAGACGACTAACTGCATTTGCAGCATCGATTGGGCTGCCATTTTCGTTTGGCCAGTGTCGCCTTGACAGTGATGAAAAGTTCAGACCTGCCTCAGTAAAAGTAATTAAAGGTGAGACTGTGATTGTGAATTGTATGCTTCATTCTCCACACATCCCACATCGATCTGCCATCTCGATAGCTTCTTTTCTGACTGGTGCGGCTACGATTGGTGCAAAATTAATCACATTAGTTGAGGAGGAGTACGAAACTAGAAACAATGAGGACGAAAATGCTTTTGTAGCGACATTTATGGATGAATTGCATAGGTACTCAGCGATTTGGGATTCGTTAGAAGCAGGTTTTCCAATGCAAGCGAAAGCTAGAGAGTTGGTTGAAAAAGTTATATTAGCACCTAGAATTTGTAGCGCCGTTGCCAGGGCATACAATCTGAATGAAGAAGAGTTGGACAAAGAAAATGGATGGGGAGATTGGCTAAGTAAAGGTGGATTTTGCAGAATTGGTATTAGTTCATTTAATCACTGTCAAGCTAGACTGCTTCTTGATTTGTACAACAGTGGGCATAGAGCTGAAGAGTATGCACTTAACAAGTTAGTGTTAAGTTGGAAACTGCGACGCCTAATGTCTGTCTCAGTTTGGTCACCTCCGCCACAATCTACCACAAGTGGATATTCATCATAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010916821.1	1.2e-138	LOW QUALITY PROTEIN: nodulation-signaling pathway 2 protein-like
Swissprot	Q84Q92.1	1.6e-127	GRAS family protein 13
trEMBL	A0A8K0I352	8.5e-142	Nodulation-signaling pathway 2 protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G08250.1	51.15	1e-106	384		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g482708	AT4G08250.1	391	179	7	102	491	98	477	51.15	1e-106	384
g482708	AT3G03450.1	404	240	13	98	490	170	544	30.69	5e-40	162
g482708	AT3G54220.1	397	236	12	102	492	284	651	31.74	2e-39	160

Ortholog group

Species	Genes
Allium cepa	g202576.t1; g482708.t1; g482709.t1
Allium fistulosum	AfisC3G05947; AfisC4G02288; AfisC4G02289
Allium sativum	Asa2G04938.1
Arabidopsis thaliana	AT4G08250.1
Oryza sativa	LOC_Os03g15680.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	108	490	316.2	2.5e-94

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005783	C	endoplasmic reticulum
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005635	C	nuclear envelope
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0012505	C	endomembrane system
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031090	C	organelle membrane
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031965	C	nuclear membrane
GO:0031967	C	organelle envelope
GO:0031975	C	envelope
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network