Detail information of g482905


Location
GeneChrStartEndStrand
g482905Scaffold_85905:HRSCAF_468991127725155206+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrKAF7121124.17.5e-36hypothetical protein
trEMBLA0A834G0G75.4e-36CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G27470.167.743e-32 134NF-YB11nuclear factor Y, subunit B11

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Ortholog group
SpeciesGenes
Allium cepag482905.t1
Allium fistulosumAfisC1G08540
Allium sativumAsa7G06918.1
Arabidopsis thalianaAT2G27470.1
Oryza sativaLOC_Os09g39490.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00808.20CBFD_NFYB_HMFDomain4211136.63.6e-09

Gene Ontology
AccessionOntologyName
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0008622Cepsilon DNA polymerase complex
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0042575CDNA polymerase complex
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0061695Ctransferase complex, transferring phosphorus-containing groups
GO:0070013Cintracellular organelle lumen
GO:1902494Ccatalytic complex
GO:1990234Ctransferase complex

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K02326POLE3; DNA polymerase epsilon subunit 3EC:2.7.7.7 DNA replicationko03030
Base excision repairko03410
Nucleotide excision repairko03420

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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