Gene information

Detail information of g484464

Location

Gene	Chr	Start	End	Strand
g484464	Scaffold_86147:HRSCAF_469233	424248	425072	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252247.1	5.2e-33	growth-regulating factor 1-like isoform X2
Swissprot	Q6AWY8.1	6.9e-22	Transcription activator GRF1
trEMBL	A0A5P1FJN5	5.1e-30	Growth-regulating factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13960.1	52.73	1e-23	106	AtGRF5;GRF5	growth-regulating factor 5

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g484464	AT3G13960.1	110	39	3	13	112	16	122	52.73	1e-23	106
g484464	AT2G06200.1	194	109	4	13	185	6	199	32.99	4e-21	98.2
g484464	AT4G37740.1	102	42	3	13	106	164	262	48.04	1e-20	96.3

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	13	45	39.5	3e-10
PF08879.7	WRC	Domain	72	112	57.8	5.9e-16

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network