result

Gene information

Detail information of g484555

Location

Gene	Chr	Start	End	Strand
g484555	Scaffold_86151:HRSCAF_469237	726848	729368	-

Sequences

CDS

Protein

Gene

>g484555.t1
ATGGGTGAAGGATATGTAAAAGTGATGACGGATGAACAAGTCGAAGTGTTACGACGCCAAATCTCAGAATATGCCATCATTTGCGAACAACTTGTTCAGATGCACAAGTCTATTACTGCTCAAAACGATAATTTTGCAGGTTTGTCCTTCTTATTTATTTTTTCCTCTTCAATGCAGACAAATTATCTTGATCATTGAAAGTTTTATATTGATGATCTCTTTTTCTCTCTTACTTGATCTATCATTTATGGAAAAGAGACCAAAGTAGACTACTTAGTTTACTGCAGTGAGTGAGATAGTCCTGTTTATTGTCAATCTATAAAAACCGAACTAGAAGTTGGTAACTTTAAGATTTTTGAGTTCTACAATCATAGATCTGCAAGCAAATCAGTCAATTTTGTTGAGTTACATGAGTTATTTGTTCCTGGGATTATGTAATGAATTGTTTATTGAACTTGTTGAGAAGGGCAGGGAATTGATTTGATATTCTCGAAATTCAGTTAGTAAATAGGTTTTAAGAAGTATTTGAGTTGGAACTCCTCAGCATAATTAATTTACATTCTTTTCAGTTAGCAAATAGGCTTTAAGGAAATTTACTATCAAAGCATATACTGAATCTCTTCATGAATTACACCAGTTTTAATTCCTTTTGTGATCATTGTCATTCTTTGTGTAGTGTTGTTAATCAATCTTTGTTGCTTAGGCTGTTGGTAATGTTTGTTTCCGACACTGTGTGATATTACTAATATAATATATTAGTGCTGTCGTTTTACCAAAGTTATTAATTCAGACAAAAATGTTTTACCAAAGGTGGATAGTTACTTTATACTTTACATTAAAATTGTCTTGTCTCTTATTGAGTGCTCAGAGCATCTTCAATGCGGTTGTTATCTTATATTCTTATTTCGCATAAGTCATAGGCGAGACTGACATATTATAAAATAACATGATTCGTTGAGCTCACATTCCCCAGTGCGTTTTTTATAATAACCACTATAAATGGTTCAAAAACGGTGCATTTTTTCTAATATTCACTACAAATATGTCAAAAGCAGTGTTAGTTGCAGCATACCTAACATCTTTTCTTTTTTTTTCCCTTGTTCTAAATGATATTTGTTATAAAGCTCATTTGGACAACGTATTCAATAATAAAACTAATATTGTTTTGTATGTTTCGTCATCCATGTCATATAAGATTTAGGAGACTTGACGATCTTAATTTATACCAAAATAGTTTTGCTTAAAAACAGAGAACTACAGTTAACAAGAATTATGTTTTCTATTCGTTCTGTTAGTTGGTGTTTTGATATTAAGATCGATATAAAGTTCTTATCTCAGTGAGCTGAAGTACATCAATTTGATAGAATGTACTTTATTTTATTGTTAAAAACAGCAATAACCTTCGCCTTTTTGGAAGAAGTCTGAATAAATCAATAAGTATTGGGTAGAACTAACAATTCAAGAACTGTCATGTAAATAAAAGTTGGATTATGAATGTCAACAACATGGTATCAATATATGTTGTACGTTATCTGCCATGCGTTTTATATATTTTTGAAATGTATGTTGAGATAAATTTGTCAAGGACTCTTAAGCAATAAAACAAGTCAATGATAAATCTTCCTTGGAATGCAGATTAAAAGGCTAATATCTTTAAACATTCTAGAAAATGATGTTGACATTGCATATTTCTCTTACTTTATAAGAAATCAAGCTAGACATAGGCCTATATATCAAAGTAATTTCAAGGGCCTTTTCTTATAACCTTCATTTACATTTACATAACCTACTTTTTATGAGAGTTGTTTGTAACATATCAAAGTAGTTTCAAGGGCCTTTTCTTATAACCTTTTCATTTACATTTACATAACCTGCTTTTTATGAGAGTTGTTTGTTTTTATATTATATAGGAACGAGGCTTAGTGGATTTTACGCTGATCCAACGACACCTGGTGGCAATAAGCTTGCAGGAAGGCAAAGGTGGACTCCAACAACAGTTCAGCTACAAATTCTGGAAAGCATATTCGATCAAGGCCATGGCACTCCCAGCAAGCAGAAGATAAAAGATATAACCCGTGAACTCACCCATCATGGTCAGATTTCTGAAACAAATGTCTATAACTGGTTCCAAAACAGGAGAGCTCGGTCAAAGCGTAAGCAGACAAATTCACTTCCTAATAACACCGAATCGGAGCCTGAAACCGAGTTTGAATCTCCAAGCGAGAAGAAAATCAACTCACGCAGTGCAACTCCAAACGATAATAGTAACAATAATATTGAAGTAACCTCTGAAACAAAATCATCTACAAGCACTTGCCAAATGCCTATTTTTGACAATATGTTGCCAAACTCAGGTATGTGTACATATAACAACAGTAACATAATGCGATTTTGTTTTATCTTTGGATGTTTAATGGTACTTAATTGCATAGGAGTTGATCACTTGATAGGAAAATTTGAAATGCCTGAAAGACACAATGGTATAATTGGAGATAGCTACAATTTTTTGAGGCGAGGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242774.1	5.7e-48	WUSCHEL-related homeobox 8-like isoform X2
Swissprot	Q5QMM3.1	2.7e-50	Protein WOX13
trEMBL	A0A6I9RZY4	4.1e-48	WUSCHEL-related homeobox 8

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G35550.1	54.46	6e-53	203	ATWOX13;HB-4;WOX13	WUSCHEL related homeobox 13

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g484555	AT4G35550.1	224	83	6	5	210	34	256	54.46	6e-53	203
g484555	AT1G20700.1	205	85	6	7	203	29	208	42.44	9e-41	163
g484555	AT1G20710.1	127	55	2	7	130	13	139	54.33	4e-28	121

Ortholog group

Species	Genes
Allium cepa	g484555.t1
Allium fistulosum	AfisC3G06693
Allium sativum	Asa2G05213.1
Arabidopsis thaliana	AT4G35550.1
Oryza sativa	LOC_Os01g60270.1; LOC_Os01g60270.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	68	128	66.2	1.5e-18

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0001067	F	regulatory region nucleic acid binding
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009790	P	embryo development
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009889	P	regulation of biosynthetic process
GO:0009933	P	meristem structural organization
GO:0009987	P	cellular process
GO:0010014	P	meristem initiation
GO:0010016	P	shoot system morphogenesis
GO:0010072	P	primary shoot apical meristem specification
GO:0010087	P	phloem or xylem histogenesis
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043565	F	sequence-specific DNA binding
GO:0048316	P	seed development
GO:0048367	P	shoot system development
GO:0048507	P	meristem development
GO:0048508	P	embryonic meristem development
GO:0048532	P	anatomical structure arrangement
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051301	P	cell division
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090421	P	embryonic meristem initiation
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K18490	OTX2; homeobox protein OTX2	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network