result

Gene information

Detail information of g485172


Location
GeneChrStartEndStrand
g485172CHR1147533491147543406+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrQBM06264.11.8e-102CCA-type MYB transcription factor 1f, partial
SwissprotQ7XC57.11.1e-88Myb-related protein S3
trEMBLA0A482DGC61.3e-102CCA-type MYB transcription factor 1f (Fragment)

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G47390.154.128e-93 337MYBHmyb-like transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag485172.t1
Allium fistulosumAfisC1G04170
Allium sativumAsa0G04740.1
Arabidopsis thalianaAT5G47390.1
Oryza sativaLOC_Os10g41200.1; LOC_Os10g41200.2; LOC_Os10g41200.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain15519839.15.4e-10

Gene Ontology
AccessionOntologyName
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001101Presponse to acid chemical
GO:0001558Pregulation of cell growth
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0007568Paging
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0042493Presponse to drug
GO:0010038Presponse to metal ion
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009642Presponse to light intensity
GO:0009646Presponse to absence of light
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009737Presponse to abscisic acid
GO:0009739Presponse to gibberellin
GO:0009751Presponse to salicylic acid
GO:0009753Presponse to jasmonic acid
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010150Pleaf senescence
GO:0010252Pauxin homeostasis
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0014070Presponse to organic cyclic compound
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0046677Presponse to antibiotic
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0046686Presponse to cadmium ion
GO:0022622Proot system development
GO:0030307Ppositive regulation of cell growth
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0033993Presponse to lipid
GO:0040008Pregulation of growth
GO:0042221Presponse to chemical
GO:0042592Phomeostatic process
GO:0043086Pnegative regulation of catalytic activity
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044092Pnegative regulation of molecular function
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045927Ppositive regulation of growth
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048364Proot development
GO:0048366Pleaf development
GO:0048367Pshoot system development
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048527Plateral root development
GO:0048528Ppost-embryonic root development
GO:0048583Pregulation of response to stimulus
GO:0048585Pnegative regulation of response to stimulus
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0048878Pchemical homeostasis
GO:0050789Pregulation of biological process
GO:0050790Pregulation of catalytic activity
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051128Pregulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051341Pregulation of oxidoreductase activity
GO:0051354Pnegative regulation of oxidoreductase activity
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0065009Pregulation of molecular function
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:0099402Pplant organ development
GO:1901363Fheterocyclic compound binding
GO:1901700Presponse to oxygen-containing compound
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000468Pregulation of peroxidase activity
GO:2000469Pnegative regulation of peroxidase activity
GO:2001141Pregulation of RNA biosynthetic process
GO:0090693
GO:0090696
GO:0090697
GO:0090698
GO:0140110
GO:1905392

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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