result

Gene information

Detail information of g486275

Location

Gene	Chr	Start	End	Strand
g486275	Scaffold_86399:HRSCAF_469485	571939	572664	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008803692.1	3.1e-47	transcription factor HEC3-like
Swissprot	Q9LXD8.1	7.9e-40	bHLH transcription factor bHLH043
trEMBL	A0A8B7CPQ0	1.3e-47	transcription factor HEC3-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G09750.1	86.67	6e-39	157	HEC3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g486275	AT5G09750.1	105	9	1	98	197	92	196	86.67	6e-39	157
g486275	AT4G00120.1	97	18	1	100	196	87	179	77.32	3e-37	152
g486275	AT5G67060.1	91	19	0	98	188	95	185	79.12	1e-31	132

Ortholog group

Species	Genes
Allium cepa	g486275.t1
Allium fistulosum	AfisC1G08377
Allium sativum	Asa7G06709.1
Arabidopsis thaliana	AT5G09750.1
Oryza sativa	LOC_Os08g01700.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	139	180	26.6	3.9e-06

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0010468	P	regulation of gene expression
GO:0010500	P	transmitting tissue development
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048444	P	floral organ morphogenesis
GO:0048445	P	carpel morphogenesis
GO:0048449	P	floral organ formation
GO:0048462	P	carpel formation
GO:0048467	P	gynoecium development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0140110
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network