result

Gene information

Detail information of g486938

Location

Gene	Chr	Start	End	Strand
g486938	Scaffold_86468:HRSCAF_469554	295989	300777	+

Sequences

CDS

>g486938.t1
ATGCTATTGGATCAGATGGAAGATGCTACAAACACAAGGGATAAAATTGATATTCACGTTTTATCTGAAAAGGCTCCAAGAATTCAAACTTTGGAAAGGTTTCCAAAATATGAAAGATCCCCAAGAAGGCAAGCATCTCTTTCTGCTTCTGCCCAAGATTTTCGAGCTTTGGAAGAATTCGAGATGGATTCAATCTTAAAAGCACTAGACACAACCCCTCGTTCTCCAAGAGATGTACTAGAAGAGAGCTTACGGTTTTCAGATTATTCGGATTCAAACTCATCTTCAAAAGAAAGTACTACTTCTTTAGAAGGGCAATGTGTGAATAGCAACGCTTCTTTATGGCGTGGGTTCTTCAAATTGTGGAGGAATAGATCGATGAAAAGGTTGCATAGTTTCCCTCCAAGTGTTTCACGGATTTCTAGGTGGATAAGCATCAAAGATCATCATGATATGTCAGTTAACGGCGATGATGGCAATGATTTTTGCTTGTTTAAGCCTTCTTGGAAGATTTTCACTAGCTTGGAGCTTCAAAATGCGACTAATAATTTTAGCCATGACAGTATCATTGGCTCTGGTGGATATGCAGAAGTATATGAGGGAAAACTCGAAAATGGGAAACTAATAGCCGTTAAGAAACTGATCAAAGGAACAGTGGATGAAAAAACACATTTATTCTTATCTGAACTAGGCATATTGGTTCACATAAACCATGAACACATAGCAAAATTAGTTGGCGTTTCCGTAGATGGAGGCTTCAACCTCGTATTCAGCTTATCGCCTCATGGAAGTTTATCGACTCTTCTTCATGGCCATGGAAGCTTATCATCTCTTCTTAGTGGCACGTACAGAGGTAAATTAGAATGGGAAATCAGGTACAAAATCGCTTTAGGCACAGCACTGGGTCTTGAATATTTGCACGAAAGGTGTCAGCGCCGCATAATTCATCGAGATATCAAGTCTGCTAATATCCTCATTACTGAAAACTTTGAACCACAGATTTGTGATTTTGGTTTGGCGCTGTGGCTGCCTGATCAGTTAACCCATCATATAGTTTCAAGCTTTGAAGGCACTTTCGGATATCTTCCTCCAGAGTATCTCACTCATGGTGTAGTCAATGAGAAAACAGACATATTTGCATTAGGCGTTTTGCTATTAGAGCTTGTGAGTGGGCGTAAAGCTATAGATTCTTCGAAACGGAGCCTATTAATGTGGGCAACGCCACTGATTGAAAAGAATGCAATAGAAGAACTTGTTGACCCTTCTATGAATCACGTTTACGACAGTGAACAACTGAAAAGAGTGATAGAAGTCGCTTCATTGTGCACTCAGCATTCAGCTGTGCTGCGGCCTAGGATAAGTGAGGTTTTGACCCTGTTAAGAGGGGAAGAAGCGAAATCGGATGATAGAGTGATGCACAAAAAGAAGGTGAAAAGAAGGACATATTCAGCAGAATTACATGATGCCGAAGATTATCACGTAACTAGGTATATGAGTGACATTAGTAGGCATAGGCAGATTGCTTTAGATTTCCTATGA

Protein

Gene

>g486938.t1
ATGCTATTGGATCAGATGGAAGATGCTACAAACACAAGGTACATTCACTTTCTGAGTAGTCAACTGTGTGAATATTTTCGATTTCAGTTTTAGCATTTTAATAATGTTGATTTGAAATTTTATTTTTCAGTTTTTTTTTTGTGTTTCTAGAACATAACAAGTTTTTTTTGTGTTTAAATCATGTTTGGAAGTGTTACTGTTTGAATCTGTGGAGTAAACCATTTAGCCTAGGTGCCCTATCCATCATCCAGATCAAACTTTACGTTTTCTGGCAACCTTTTACATTTCATGTTCTCGTAGAACCTTTCTACGCAGCAAAGGCATTCATGTATGAATTGAATAATCATTCATGTATAATTTCCTGCCCAGTATCATACTTGTCTAACTCTCATTTCAGGGATAAAATTGATATTCACGTTTTATCTGAAAAGGCTCCAAGAATTCAAACTTTGGAAAGGTTTCCAAAATATGAAAGATCCCCAAGAAGGCAAGCATCTCTTTCTGCTTCTGCCCAAGGTATCTTATGCATATTTATAATCTTTTCTAACTTGGGTTAGAAACTCACTCATAGCTATTAATCCACTGTTTTCAGTTATATTTTGCTCATGTTATAGCAAATGTACTTCCCATTTCGTAGATTTTCGAGCTTTGGAAGAATTCGAGATGGATTCAATCTTAAAAGCACTAGACACAACCCCTCGTTCTCCAAGAGATGTACTAGAAGAGAGCTTACGGTTTTCAGATTATTCGGATTCAAACTCATCTTCAAAAGAAAGTACTACTTCTTTAGAAGGGCAATGTGTGAATAGCAACGCTTCTTTATGGCGTGGGTTCTTCAAATTGTGGAGGAATAGATCGATGAAAAGGTTGCATAGTTTCCCTCCAAGTGTTTCACGGATTTCTAGGTGGATAAGCATCAAAGATCATCATGATATGTCAGTTAACGGCGATGATGGCAATGATTTTTGCTTGTTTAAGCCTTCTTGGAAGATTTTCACTAGCTTGGAGCTTCAAAATGCGACTAATAATTTTAGCCATGGTACTGTTTTGTGCATTATTTCAAATTTTTTTATCATTGCTATAACACATTAATGTCTTATGAGCACTAAGAACCTGTATCACAAAAACTTACTTTTTTTAACTACTTAAAAGCAGTTTTGAATAATAATTTTTAGTTCGTTTTATGTGAATAGCAGCATAATTTTTTTTTTTGGGTAAATATGTTCAAATTGCAGTATGATTTAATTATAAAAATTGAAAAGAAAAAATCATAAGCAAGCAATTGTTATTTATGACCCATCATATGAGTAACTTATTGTCTCTTTATGAGTTGTTGAGAAGCACGCAAACAGTAATATGTAATTAATAAGTTGTTTTATTTACTATAAGTAGTTGCCAAACATACTCTTAAGGGTCCGTTCTTTACGAAGCCAGCGGGGTATTTGAGCGGGGTATTTGGTTGAAAGGGGAATGTATTTAGCGATGCGAAAGGGTTATTTGAGCGGAGTATTTAAAATGTGATTTTTAATTTAATTGATTTATAGTTAGTTAATTGTTTGTTTTATTGTGTAATATGTGTTTAATAATTACAAATAAGACATAAGTTGCGCGATTTCATTAAAATAAACTAAAAAAATATTTCAAATTCAATACGCAAAGAAATATTAAAAAACATACAAAAAAATAAACTAAAACAAATGACGATATGCAACAAATCCAACTCATACATTATAAATTATGCTGCTTCTTCATCACTCAATTCTTCCACGGTATCCAAGTTTGTAACTTCGTTGCAAAAAATTAGCGTAAGGTCTCACCGCCGAACAAGTGTAATAGGAGCCGGTAAACCATAACAAAGATGCACGACATTGTTGAAACGATCTGTATTCACAATCGACTTTCTTGTGTTATGCTTGCTCGAACTGCCCTGCATGGCATGCCTTACTGCGTCTAGCCGGTTAAGTAACTGAAGGAGGGTCGATGTCATCGGCTACCCAATCGAAGTAATAGTACGTATCAGCAGCAGTAAAAGGTTGAGTGGGTGGGTTGAAAGCAATCGGATATCTGTAAGTCCTCTCACATATGCAACCTCCAAAAAGTTCATCCAATCGTCTGAATCTGAATACGAATTGTTTTATGAATTTTTTGTATCTTCATGCTGTCGTATTTCATCACTTTTCTGGACCGTCAATGTAATCGTTCTCTGAATCCCAAAACCCCTCCTTTCAACTGTAGTAGTTTGTCATAGTCAATTCATATACTCTTCAGATTGTCCCATTTGTTCTTAATTTGTGTCTCCGACCAGTTAAGATTCATTCTATCGTTTAAATCGCTTGTCTCGACGCATGAAACGAGCTGTCAAAAAAAAAAAAAAAGGTAAAAATTCTACTCACAAGTCTATGGAAGTTGAAAGTCTTTCAGGCGTCTGTGAGACGATAGGCTGAGAGGAAGCAGAAGCAGACGATTCGTGCGACGTTCTGAAAATTGAAAATTACAAATTGTAACAAAAAATATATTTTATAGGCACGAGTAAAATATACACAAAAATGTAAAAATATACCTTATTAGATAATCGATTTGGCATGTAGAAACTCTTGAATTTTCGGATTGGAGGTGTGGAGTTGGAGGAGAGGAAGAAATAAATAGGAGTAGCTGCTTTTTGTTTGTTTGTTTGGGGGGTGTTGGGGTGGGGGTGGGGGGGGGGGGTGAACAGTCCGATGCCAACGTACCATTTCTCCCCATTCGCCACAATGGTCCATTTGGGGAAACTCCCCATTCGCCACAATGGTCCATTTGGGGAAAATGGACCGTTGCGGCGTCAGACGGGTTGGAAACGGTAACGGTGCAAAATAAGACGACGAACGTTACCTAAAAGTGCAAATGAATGTCTGGACTTTGTAGTTTCGAACAAAAATACCCTTGGTTTAATTGAAAGGTAAATTTGTTCTTCCTTTAGTGTAATGCAGCTAAGACAGTGAACGCGTAGTGCGTACTCCTTTCTAATGCGTTAAACTTGAAATTATCTATGATCTATTGTAATACCCGAAGCCTCCATGGATTTTCAAATGAAGATCAAGATTACAATAAAAATTCTGTGCTATAACAGAAATGAGACTGTTTGCCAAACAGCAAAAGTAACTTATTAAGTTAAATTTAGTATTTGGAATGGTTGGGCTTTTTATTTTATTTTTGTTGACGACGACTGACTTAGCCACCGATAAACCGTATGCAAAATTATAAACATGACTTATTTCAAGTTTTACAACTAAATTTTGTCACAGTTCAATGTATCTATCCAAACACTTTTTTTTTTGTTCATTCAAAACTACTCAAAATACCTCTTAGGGATATTTTAAACAATATTATACCAATCCCTGCCATATGTGGAAATATATAACTATTTTTTAACGTGCAGACAGTATCATTGGCTCTGGTGGATATGCAGAAGTATATGAGGGAAAACTCGAAAATGGGAAACTAATAGCCGTTAAGAAACTGATCAAAGGAACAGTGGATGAAAAAACACATTTATTCTTATCTGAACTAGGCATATTGGTTCACATAAACCATGAACACATAGCAAAATTAGTTGGCGTTTCCGTAGATGGAGGCTTCAACCTCGTATTCAGCTTATCGCCTCATGGAAGTTTATCGACTCTTCTTCATGGCCATGGAAGCTTATCATCTCTTCTTAGTGGCACGTACAGAGGTAAATTAGAATGGGAAATCAGGTACAAAATCGCTTTAGGCACAGCACTGGGTCTTGAATATTTGCACGAAAGGTGTCAGCGCCGCATAATTCATCGAGATATCAAGTCTGCTAATATCCTCATTACTGAAAACTTTGAACCACAGGTTTCTTTTGAAGTAACTACACTAGTTTCCTGGACATACAATAAAATTGGATAAAACTATGTTTGAATTTTAATGCAGATTTGTGATTTTGGTTTGGCGCTGTGGCTGCCTGATCAGTTAACCCATCATATAGTTTCAAGCTTTGAAGGCACTTTCGGGTATTTATCCTCCGAAAAATTCAGTTGAAGCTGCATTCATATATATATTTTCCTGTTACATTAATGCATGTGTACAGATATCTTCCTCCAGAGTATCTCACTCATGGTGTAGTCAATGAGAAAACAGACATATTTGCATTAGGCGTTTTGCTATTAGAGCTTGTGAGTGGGCGTAAAGCTATAGATTCTTCGAAACGGAGCCTATTAATGTGGGTACGTGAGTGTGTATAGGATTATGCAGAGTTAGACTTTTGTGCAATGTATGTATATAAAATCATCTTTAACAGTGAAGTTAAATATCACAAATTAAACTGTGGCACTTAGGCAACTTTAACTAGCCGTGGACGTGTTAAATTTAACTAGATATTTTTTTAGGCAACGCCACTGATTGAAAAGAATGCAATAGAAGAACTTGTTGACCCTTCTATGAATCACGTTTACGACAGTGAACAACTGAAAAGAGTGATAGAAGTCGCTTCATTGTGCACTCAGCATTCAGCTGTGCTGCGGCCTAGGATAAGTGAGGTATGTTTTTCTTTTGAACGTTGCCTGTATTTTAACTGAACTGGTTTGTGAGTCTTGACTATGTTGAATATTTGCAGGTTTTGACCCTGTTAAGAGGGGAAGAAGCGAAATCGGATGATAGAGTGATGCACAAAAAGAAGGTGAAAAGAAGGACATATTCAGCAGAATTACATGATGCCGAAGATTATCACGTAACTAGGTATATGAGTGACATTAGTAGGCATAGGCAGATTGCTTTAGATTTCCTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010914353.1	5.7e-144	receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X2
Swissprot	Q8RXC8.1	2.4e-115	Protein ROP BINDING PROTEIN KINASES 2
trEMBL	A0A6I9QSN5	4.1e-144	receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G05140.1	50.31	1e-124	443	RBK2	ROP binding protein kinases 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g486938	AT3G05140.1	477	201	7	48	509	3	458	50.31	1e-124	443
g486938	AT5G18910.1	405	190	4	110	509	113	506	49.14	3e-115	412
g486938	AT5G35960.1	395	166	5	75	462	33	401	49.62	1e-104	377

Ortholog group

Species	Genes
Allium cepa	g486938.t1
Allium fistulosum	AfisC5G00621
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	186	451	137.6	4.3e-40

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019899	F	enzyme binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051020	F	GTPase binding
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network