result

Gene information

Detail information of g488413

Location

Gene	Chr	Start	End	Strand
g488413	Scaffold_86703:HRSCAF_469789	264427	266560	+

Sequences

CDS

Protein

Gene

>g488413.t1
ATGTGGTGTAATGCTGTATATATAAATCAGTGCGGTGCTGATGTGAGTTACAAACACAATGCTTGGGTGGTGAGTGATGATGAGCCAACAAGAACTTTGGGATATTTTAAGGGGGGTAGTATGTAAAATCTCTTTCAAAAAGTTAATACCAAGATTTTTTTTTGTATAATGGTCTGCGTTGCTTTCCAAGGTGGTAGGAGTTCGAATCCCACGGTCGTTTGTGTATGTTGGATATTTGTGATGTATAATGATTATGTTTGTACTGATGGATATTTGTGATGTTGGGTATGTATTTGAATATGCGATTGCATATTATTTGGTTATAATTTTGGGACTAAATACCGATTATATATGAATTTGTGATTGATTTGAGAAATGCAGTAGAAATGTTGTAAAAATACTTCGACAAAGGTGTCAAAAAATTCAATTTTAGTATTTTAATTTGACGTCAGTAGACGTCGACAAATACATTTATAGGCGCCGACGTGTCATAAATATGACGTCAGTGTGGCGTCTAAATGATGTCGAAAATTTGATGTCGTAATATGGCGTCAATTTGATGCCGGTAAGTACTCCACGAATGACATCAATCCGACGTCGATTAGAAAATTTCGACGCACTGTTTACGACATGGTGTATGCAGTCGACGCGGCATTGATATATGGTTTATCGATGTCGTGCCAATGCCATATTGACATTGGTAAACGTGCTTTCACTTTTAGTGCTAGCCGTTCTCATCCGTTGTTACCACTAGAGCCATCGTCAGTCATACGTCTCCAAACATGCATTATTGTCCACCTCCATAGTCTTTGATGTGTGTGTATAGACACACTTATATACACACACCCCTTCAAACAATTTACCTTCCTTCTAATACTAGATTGATGGTCTAGAGTGTAATTGAAACTGGGTTAAGCAAATAAGATTTCTTCAAGGGTTTCTAGTAGTAATTACACTTCAAACCATATAATGTGTGCACGAAAATGAAACACGAGTTTGTTTCACGTGCTTGAATTTTTTTGCAACAAAAGAAGTTGATTTACATTTTTGTTGCATGTCCATTGAACCGGCTAGTAAGAAGTGAAAGCAAAGCATTATTAACGTGATTATTAATTACATTGACACAGGACGCCATGAAATTTGCTCTTTGCAAGTTGAAGAAAGCGTAAATGCGTACGCATAGCACACAGTGATTTCGCTTTATATCTACAGTACCCTTTCCTACTGCCTCATCAAAAAAGTACACACACTGCATAAATATAACACACATGAAAAACACATCAACATAATTAATTACAAAAACCCTTTTCACGCAGTAAAATACTGCTGATCACTCAATGACAAACGCTATTAATTGTCACACTGAATTGGAAAACAACATATTAGTAAGCATACAACCACTCACCTGCTTGTGCATGGGGCACCCCTACTTTACAAAATTAATTATTCCTCCTTCTTTTTCGCTCTCCCTCCTACTACTTAAAAGCCCACCTCCTCAGTGCATTTGGTACCACACCTTATACACATACATTCGTATAACAACCACCTAAAAAAAAAAAGACTCCTTATCATGCATTGTGCTGAACCCATCTCTTCTACTCCCTCCATTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCTTCCAACTCTTCCAAAAAACGCAAAGCTTGCACTGCCGGCGAATGTCCTAAAGACGAGAAACATCCTACGTACAGAGGAGTGAGGATGCGTAACTGGGGCAAATGGGTGTCGGAGATCAGAGAACCTAGGAAGAAGACAAGGATCTGGCTAGGCACATTCCCAACTGCTGAAATGGCTGCACGTGCACACGACGTCGCTGCAATGACCATTAAAGGTGAATCTGCCTACTTGAATTTCCCTGAACTGGCTGCGGACCTTCCCAAGCCTGCTTCTACTTCCCCTAAAGATATACAGGCTGCTGCAGCTAAAGCGGCTGCATTGAATTTTCCAGTGCAGGAGAAATGCAAAGATGTTGTAGTCGATGAGAATGAGGAAGTTGTCTTTGATTTGCCTGATCTCTTGCTTGATCTCAGAGGTAGTTTTAGTTGCTCCAGTTCTTGGGACTGTATTGACTTTCGAATCGACGAGCCTTTTCTTTGGGAGTATTGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010919644.3	3.6e-51	LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF038
Swissprot	Q9SUK8.1	5.3e-39	Ethylene-responsive transcription factor ERF039
trEMBL	A0A6I9R9E1	2.6e-51	LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF038

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G44940.1	46.26	1e-40	163		Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g488413	AT2G44940.1	214	47	8	92	245	87	292	46.26	1e-40	163
g488413	AT4G32800.1	96	26	0	100	195	9	104	72.92	2e-38	155
g488413	AT5G11590.1	122	39	1	72	193	18	134	63.93	6e-38	154

Ortholog group

Species	Genes
Allium cepa	g301321.t1; g428902.t1; g488413.t1
Allium fistulosum	AfisC1G02172; AfisC1G02395; AfisC1G04354; AfisC1G05814; AfisC2G00421; AfisC2G01326; AfisC3G01565; AfisC4G01822; AfisC4G03226; AfisC5G05155; AfisC5G07034; AfisC7G00931; AfisC7G00932; AfisC8G02604
Allium sativum	Asa1G02634.1; Asa4G02510.1; Asa7G02166.1
Arabidopsis thaliana	AT2G35700.1; AT4G16750.1
Oryza sativa	LOC_Os02g43970.1; LOC_Os04g46440.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	109	159	47.9	1.1e-12

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network