result

Gene information

Detail information of g488439

Location

Gene	Chr	Start	End	Strand
g488439	Scaffold_86706:HRSCAF_469792	152697	153071	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	CDO99509.1	9.4e-24	unnamed protein product
Swissprot	Q94ID6.1	6.1e-20	Ethylene-responsive element-binding factor 12
trEMBL	A0A834ZU27	2.3e-24	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G28360.1	90.00	4e-21	96.3	ATERF12;ERF12	ERF domain protein 12

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
g488439	AT1G28360.1	50	5	2	51	21	70	90.00	4e-21	96.3
g488439	AT5G44210.1	50	8	2	51	42	91	84.00	1e-18	88.2
g488439	AT3G15210.1	48	7	2	49	34	81	85.42	8e-18	85.5

Ortholog group

Species	Genes
Allium cepa	g42895.t1; g488439.t1
Allium fistulosum	AfisC2G04898; AfisC3G07792
Allium sativum	Asa3G02257.1
Arabidopsis thaliana	AT1G28360.1
Oryza sativa	LOC_Os05g41760.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	2	41	33.3	3.8e-08

Gene Ontology

Accession	Ontology	Name
GO:0000160	P	phosphorelay signal transduction system
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009723	P	response to ethylene
GO:0009725	P	response to hormone
GO:0009755	P	hormone-mediated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032870	P	cellular response to hormone stimulus
GO:0042221	P	response to chemical
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071310	P	cellular response to organic substance
GO:0071369	P	cellular response to ethylene stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network