result

Gene information

Detail information of g491448

Location

Gene	Chr	Start	End	Strand
g491448	Scaffold_87116:HRSCAF_470202	185258	187111	-

Sequences

CDS

Protein

Gene

>g491448.t1
ATGGATCAGGTGGGTACTTAAGTGATTTTACTGAATTTTGTGTGCGCTTAAATAGTGAAGTAGTGATTTCATGTTTTGAAAGTAATGCGAGTGATTTTTGTGCATTATTAGTATGAGAAAGTGGAGAAGATTGGAGAAGGAACTTATGGAGTTGTTTACAAAGCACGTGATCGGCTGACTAATGAGACGATTGCTTTGAAGAAGATTAGGTTGGAGCAGGAAGATGAGGGAGTTCCTAGTACTGCCATTAGAGAAATATCACTGTTGAAGGAAATGCAGCATGCTAACATTGTCAGGTTATTGCTTTTGTGATTTGTGCATTTCTTGTTCGTGCAGAATAAGGATGTTTTTGTTTTGCAATCGGTTAGAAGAATTAGTTGTTCTAGTTTCGTTAATAGATCTATGTTATTATTAAATGCAATAAACACATTTTTGTTGTTGGTTAGATTGTTTGAAACAGGTCACTTATTTAGTACTCAGCTTTATAGCACATATTATTGCTGTTTAACTGTATTAACAGGTCATATATGCTAATTTAATACTGTGATTGGACATACCTCAGATTAAGATGATATTTATGCTACTTTATTGTTGTCAACACCTATTCGATTTACCTCAGCTAGAAAAGTGAATGCTTACTGAAGGGGCAATGAAAACTTATATAACTAGTGATTTATTGATCTCCGGTTGTTTACTGATAGTTACCTTACATTACTTAAATTGCCTTGATAATACATGGGTGTAGCATGAACTACCATTGCTCACAGGCAGCTATAATATCAGTTGTCATTACACTAGTTCACATAGAGAGCAAAAGTAAGGAATGTCTACTGTCCTGGTAGTTGAAGTTTTGATAAAATAGCTTCATGAAGCATTCTGAATGTGTGAATTTGGATTTTAATTTTTTCAATCTATATGCTGGTAAAGCATCTGTATACATTTGTCTATGTCATTCTAGTCATTCTGTATACATCAATAATCTGTATGCAAATGGCCTATTGAATTTCTATCCTCTTTTTGCTTATTTAGATTTTTTATTTTGACCATTTGCATGAAATCAGTCTATTAATGGCCAAAAGATTCAAGGTTGAGGCAGTCTATGATATTCTTTTTTGCGAGCATTTATGGTTGGCATATTTCTTTTGGAAATCTATTATAAAATTTGTAATTGTTCTGTCATCTTTTCCACATTAATATTGGAGTTCTTTTACAACATCATGCCAGTAATTGAGCTATAAAGAAGTTGTGTTAAATGACCTAAACAATTTTGGCATGCCAGGCTGCAAGTCGTAGTTCATAGTGAGAAGCGAATATATCTTGTGTTCAAGTATCTAGATCTGGACCTTAAGAAGCATATGGATTCATGCCCAGATTTTGCTAAAGATTCTCGTTTGGCTAAAGTAAGTTCTTCTTTGCAGTCTTGATTCATAGTCAAACAAAACCAGCACACACACCCCTCCTCTATCCCTTCCCTCAATACCCTCATTCCGTCACACATATATTTGGTCTTTGAAACACCAAAGTGAGAACTGTTATCTTTAGATGAGAGCGTATTTGTTTTGAAATTTAACAATAGAACGCTAGCATGATATTGTATTATTTTTGTTGGTTATTCCCCTTCGTGCTTTACGTTTCTTCACACTAAAGCCTTTAGTAAAATTTATTATTCAATGAATTCAGCTACTGATTGTAGCCTTTCATGTTTAATGGTCTTATTCTTTTTACCTTTTGCAGACATTTCTCTATCAGCTTCTCCGAGGAATTGCTTATTGTCACTCACACAGAGTTCTTCATCGGCACTTAAAACCTCAAAATTTATTGATACAGGCGTACCAATTCATTAAAGGTTGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	BAA21673.1	3.0e-66	cdc2 kinase
Swissprot	P93101.1	2.5e-65	p34cdc2
trEMBL	O22292	2.2e-66	Cdc2 kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48750.1	88.15	7e-67	249	CDC2;CDC2A;CDC2AAT;CDK2;CDKA1;CDKA;1	cell division control 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g491448	AT3G48750.1	135	16	0	1	135	1	135	88.15	7e-67	249
g491448	AT2G38620.2	152	57	4	1	135	1	152	51.32	5e-35	143
g491448	AT2G38620.1	152	57	4	1	135	1	152	51.32	7e-35	142

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	4	142	130.1	8.1e-38

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005886	C	plasma membrane
GO:0006260	P	DNA replication
GO:0051276	P	chromosome organization
GO:0007017	P	microtubule-based process
GO:0000226	P	microtubule cytoskeleton organization
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000278	P	mitotic cell cycle
GO:0000281	P	mitotic cytokinesis
GO:0000910	P	cytokinesis
GO:0000911	P	cytokinesis by cell plate formation
GO:0008152	P	metabolic process
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0051726	P	regulation of cell cycle
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0007010	P	cytoskeleton organization
GO:0005829	C	cytosol
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005819	C	spindle
GO:0005856	C	cytoskeleton
GO:0005874	C	microtubule
GO:0005881	C	cytoplasmic microtubule
GO:0005938	C	cell cortex
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006259	P	DNA metabolic process
GO:0006261	P	DNA-dependent DNA replication
GO:0006281	P	DNA repair
GO:0016570	P	histone modification
GO:0006325	P	chromatin organization
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006974	P	cellular response to DNA damage stimulus
GO:0006996	P	organelle organization
GO:0007049	P	cell cycle
GO:0044772	P	mitotic cell cycle phase transition
GO:0007275	P	multicellular organism development
GO:0009790	P	embryo development
GO:0007346	P	regulation of mitotic cell cycle
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0008284	P	positive regulation of cell proliferation
GO:0008356	P	asymmetric cell division
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009266	P	response to temperature stimulus
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009574	C	preprophase band
GO:0009628	P	response to abiotic stimulus
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009987	P	cellular process
GO:0010005	C	cortical microtubule, transverse to long axis
GO:0010154	P	fruit development
GO:0010235	P	guard mother cell cytokinesis
GO:0010374	P	stomatal complex development
GO:0010440	P	stomatal lineage progression
GO:0010444	P	guard mother cell differentiation
GO:0010468	P	regulation of gene expression
GO:0010564	P	regulation of cell cycle process
GO:0015630	C	microtubule cytoskeleton
GO:0016043	P	cellular component organization
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016569	P	covalent chromatin modification
GO:0016572	P	histone phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0022402	P	cell cycle process
GO:0022414	P	reproductive process
GO:0033554	P	cellular response to stress
GO:0030154	P	cell differentiation
GO:0030863	C	cortical cytoskeleton
GO:0030981	C	cortical microtubule cytoskeleton
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032506	P	cytokinetic process
GO:0033043	P	regulation of organelle organization
GO:0044770	P	cell cycle phase transition
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0036211	P	protein modification process
GO:0040020	P	regulation of meiotic nuclear division
GO:0042023	P	DNA endoreduplication
GO:0042127	P	regulation of cell proliferation
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044430	C	cytoskeletal part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044448	C	cell cortex part
GO:0044464	C	cell part
GO:0044786	P	cell cycle DNA replication
GO:0046483	P	heterocycle metabolic process
GO:0048229	P	gametophyte development
GO:0048316	P	seed development
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051128	P	regulation of cellular component organization
GO:0051301	P	cell division
GO:0051445	P	regulation of meiotic cell cycle
GO:0051716	P	cellular response to stimulus
GO:0051783	P	regulation of nuclear division
GO:0055028	C	cortical microtubule
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0061640	P	cytoskeleton-dependent cytokinesis
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0071944	C	cell periphery
GO:0072686	C	mitotic spindle
GO:0090304	P	nucleic acid metabolic process
GO:0090558	P	plant epidermis development
GO:0090627	P	plant epidermal cell differentiation
GO:0097472	F	cyclin-dependent protein kinase activity
GO:0098725	P	symmetric cell division
GO:0099512	C	supramolecular fiber
GO:0099513	C	polymeric cytoskeletal fiber
GO:0099568	C	cytoplasmic region
GO:1901360	P	organic cyclic compound metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:1901576	P	organic substance biosynthetic process
GO:1901987	P	regulation of cell cycle phase transition
GO:1902410	P	mitotic cytokinetic process
GO:1902806	P	regulation of cell cycle G1/S phase transition
GO:1903047	P	mitotic cell cycle process
GO:2000241	P	regulation of reproductive process
GO:0099080
GO:0099081
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K02206	CDK2; cyclin-dependent kinase 2	EC:2.7.11.22	FoxO signaling pathway	ko04068
			PI3K-Akt signaling pathway	ko04151
			Cell cycle	ko04110
			Oocyte meiosis	ko04114
			p53 signaling pathway	ko04115
			Cellular senescence	ko04218
			Progesterone-mediated oocyte maturation	ko04914

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network