result

Gene information

Detail information of g49177

Location

Gene	Chr	Start	End	Strand
g49177	Scaffold_28608:HRSCAF_255203	612448	615856	+

Sequences

CDS

Protein

Gene

>g49177.t1
ATGGTACGAATTTATTCCCCAAATGAAGATCGATGATTACAGTTTTTATAAAAATTAAAGGCTCGTATCAATTTTGAAAAAGTAAGATCATTTACACCAAAATAAATTCATAACTTATAAGTAAATTTACCGTTACCAATGGTTTTAATATTAGTTTACTTAGGTTTTAATATCCATTTGCTAATATATTTAACGTAAGCAACACTAAGTTTACCGTTACCGTACCAACTATATCGGTATGCAAATTTTACTATATACTGATAACCGATAATTTGATAATGGTATGGTAACTATAAATTTACTTTTACCACAATACACTAAATGACACAGGGTACAGAGAAAAGGATCATCAAAAGAATTTTAAAATTGCCAATTTTATCTTGGTTCATATCTTTGATAATAGTTGTAATACATTTGGTGTCACACTTTTTTTGTGTCAGCGTTAATAACCAAAATCGCCTCTCTATATATTATCAAATTTTAATCGCTGAAAAATAGAATTTAATGTTAAACTTCTTATACAAATTCAAACGCGCCTGAAAGTAAGATCTAACAATTAAACATGTTTTACAAATTCAAAACGCTTCTAAAAATAGAATTTAAAATTAAACTTTTTTTATAAATTCAGAATATTTCTTTACAAACATACAAATCTTGGTATCACCTGAAAATAAAAAAATATTTTTTTGACCGATTTAAACATATATAGGATTTATAAGGCACGTGCCGTGACACTCGTCGAAAAGAATTTTAAAACCCCCAAAAAAGAAAAGAAAAATAAATTTCCTCTTAATATCAAGACGCAGCTAATCAATAAAGCAAAGGTGGGACTCGTCTGTTCTTTTACAAATATAACTTTATATAGACTAGGTCATCGCTGCAGTTTAGAAGATTCGATATCTCAATAAACAAATTAAATTTCTATCCCTTCTATAAAACAGCTTTGTTTCCGATCAAAAAAACAAAAAAACAAAAACAAAAGCCCTAAATCTAACCTCCCTGTCTACCTCGAATACGACTCCAATTTCAAGGTACATTGTCTTAGATTATTGGATTTGTTCTATCCTTCATTTTTATTCTTGGCTTTGAATTTTGGGATTTAATTTTCATCATGATATGAATTTATTTATGTGTTTGAGGTACCAAGAAAGGGACATACTGCAAATAATTTCAGGATTCTATATATTATACTTGCACTTCTTGCAACATTGTTCGTATATTTGGTTATTTTCAGGAAATCATTCAACCAAAGTATTTATTTCTATACATATGAGGATTTATTTGCACATTTAATTGTGACTTGTTTGTCCAGAATCAGATACAATTAAATGATCAATGTGGATTTAAATCTCTTAAGTTATGTCATTAATTCCAAAGATTGGAATTAATTAGACACGCATACTGATAAAATAAGCAAAAAAATATCATTTTTTCTTTTAAAAAAAAGGAGAAGAGGGAGAAGATTTTAGAGAACAATTGAATTTTAATGAATATTCAATTCAAAAACATACTTTTATACACATATACATATGTATGACTTGATTTTTCTAAAAGATGTTTAAAATTCAACTGTTTGCCAAAATTTCTGATTTTTCTAAGGAAAAGAGATATTACACTCATACGCACACATCCTTTCTCTATTTCTTAAGGTTTGTCCGAGTGAAGTTATGAAATCAGTTATATGGTTGTGAAAAAATTATGGTGCAATCATTTTTAAATAACCGTTTATGATTATTCATAAAATGATGTTCATATATTGAAAAAGTATTGTAATATTTTCCTCCTTCCATACAGTAATTGATGAAGAATAGCAGTTCCACAATGAGAAATATATAAACGAGAGAGTGTACAAATATAAAGAGATTACTGTTACTTTTTCATTTTTGCTAACAGTTTTATCACTAGGATCGTAACTAATAAGTATGGTATGTACTAACAGTAGTTCTCTAGAAAATGCTACCAATAATTATGACCCCTGCCCAGTTTAATATTTCTTTTACATTCGCTTTAAATAATATTTTGTTCAGTTTATTGGTGACATTTCCTTGTAAAAATGGTTACGGGTTTCACATATTTTATGATATATGTTAATTTTAACAGTAACATTGTATGCCCACTGTACAATTAGAGAAATATTGATTTGACTTCTAGAATTTGTTTTTTCAAATTTAAAAGAACTTCAGCACTTCCATAATTCCATTTCGGTTCAACGTTGAATTGTGTGCCGCTTCCAATTTAGTGTTGTAGTCCTATTATCAAGGCCGGCCTTAGGGTAAGGCAAGCAAGTCAATCGTCTAAGGCAACCCCCTTCGAGGGGCAACCATCTGATCCGAAAATAAATATGCAGAAAAAACTCACGATAGTTTAATGGAACAAGTGAATGTTTAGCGGCTCTAATTTTGCATTTTAATGGAATTGAAAACATAGTTAGACTCATATTATTTATCAATATCGATATTGGTTCTAGTATAATTATGCTTTTTTCTTTCAATTAGAGGCAACATAGTCGGACTACGTTTGGGGCAACCCAAAAGATAGGACCGACACTGTCTGTTATCCATCTCCAACATATAATGTAAAACTCTAATCACCGCTGCTGGTCTAAACAATAACCATAGTGAAGGTGTTTCATCAAAATTTTCAGGAACAAAATTCTACTGCAGCAAGAACAACCATGCCACGGTTAAGTGCATCATCAACAGTAGCATGTGCCGGGTGCAAACACCAACGCCGAAAATGCGAAATAGGATGTCGATTTGCACCCTATTTTCCAGCCAGTGATCCTAATAAGTTTGTCAGCGTACACAACGTATATGGTGCCCGCAACGTGTCAAAAATTCTGGACGATGTAGAGCCAGAGCAGAGAGCATTTACAGTAGAATCACTGGTATTTGAAGCAAACGCCAGGCTATCCAGCCCTGCACACGGTTGCGTAGGCATCATGTACGGCTTAAAAGGCAAAATCGAAGAACTTCAATCTGCAATTGCCAATGCAAGAAATGAACTGTCTGCTTTCACAGGACCAGCTGCATTTGGCCCTTTAGTGCCGCCATATGTACTTGATCCGGAAAAGAATGAAATGGGACAGTTTGGAGCAGCAATGATAGTGGCTGCAGAAGGAACAAGGGAACAGCAGTTAGAGCAGGAGATGATGAGTTTTGTTCAGCAACAACAAAATGATGGTCTGGTTGCTAGGATTACAATTTCTCAGGAAACCGTGAATGATCTTCTGGATCAGCATCAGTATCTGTCTCTTGACCAGTGTCAGCTGCCTGATGATCAGCATATGCAGTTGCATCCAGGTCAGCATCAGCTTCTAGATCAGCATATGCAGTTGCATCCATGTCAGCATCAGCTTCTAGATCAGAATCATCATCTAGTGCAGCAAATATCAGGAATGGCGACATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020091636.1	9.0e-30	LOB domain-containing protein 36-like
Swissprot	O64836.1	6.9e-27	ASYMMETRIC LEAVES 2-like protein 2
trEMBL	A0A6P5F7Q3	6.5e-30	LOB domain-containing protein 36-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G23660.1	47.11	2e-29	125	LBD10	LOB domain-containing protein 10

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g49177	AT2G23660.2	121	62	1	49	169	2	120	47.11	2e-29	125
g49177	AT2G23660.1	121	62	1	49	169	2	120	47.11	2e-29	125
g49177	AT5G66870.1	125	70	0	47	171	2	126	44.00	7e-28	121

Ortholog group

Species	Genes
Allium cepa	g49177.t1
Allium fistulosum	AfisC2G06833
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	52	149	115.4	1.1e-33

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009954	P	proximal/distal pattern formation
GO:0009965	P	leaf morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048441	P	petal development
GO:0048465	P	corolla development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network