result

Gene information

Detail information of g493344

Location

Gene	Chr	Start	End	Strand
g493344	Scaffold_87351:HRSCAF_470437	413108	416258	+

Sequences

CDS

>g493344.t1
ATGAGCCAGGCAGAAGGACCAGCAATAGCTGCTCTTTTGATGGGAACTGGATTAGAGGCAATGCATCTGCCATTGTATAGAGGATGGAAGGAATATACAACCAGACAACTAGAGACAGTTGAAGCCTTTGGCGCAGCAAATGAAGAAGTATTCGCTTTAGAAATAGTTGTGCTAGATATGAAGCCCCATAATGATTTTGCAGCGATTGGATGCCTGGATGATAGCGTCAACCTATGTAAAAGCTCCCCTCGGTCATTTCATTTTATTCCTTTCCTCTTCCCAATCAAAACCAGAAACCAAGACCGAGAAGAAAACATGGAAGACGTTTCGGCTGATATTCACCTCGTTCTCGGCCTGGCCCAATACAACAACGGCGATAACCGTCACAATTCTACTTCTTCCTCCGTCAAACTCAATCACACGTCAAACTTCCAAATTGCCGAAGCTCCTTCTCTGACCCTCGGCTTACGCAACGAAGTGTACGGCTCTCCTAAAGTAAGCACCGACTCCAATTCCTCCATTAAACGCGAGTACGAGGACATGAAGGAGTCGCGATTGTCGTTGTCCAGGACCAGCGACGACGACGAAGCAACTGCGGCCAGGAAGAAGCTCAGGCTCAATAAAGAACAGTCCGCTTTACTGGAAGAGAAATTTAAGCAGCATACCTCTCTTAATCCTAAACAAAAGCAAGCACTTGCAAAACAGTTGAATCTTCGGCCACGCCAAGTCGAGGTCTGGTTTCAAAACAGAAGAGCAAGAACAAAACTGAAGCAAACGGAGACTGACTGCGAAGTACTGAAAAGATGCTGCGAGAAGCTGACGGAGGAGAATCAGAGGTTACAAAGAGAGGTGGAAGAGCTGAAGTTGATCAGAAGCACGACGTCGTCGTCGCCGTTGACAATGTACATGCAGATGCCGGTGGGTCCCACTGTTACTATGTGCCCTTCTTGCAACTGTGTTCGTGGCGCGGGAAGCGAATCGTCAATCATGGCTGCAGGCAGTAGGAGTAGCCCTACTACTAGTCCTTTTGGAAGACCGACTAAATGCTAA

Protein

Gene

>g493344.t1
ATGAGCCAGGCAGAAGGACCAGCAATAGCTGCTCTTTTGATGGGAACTGGATTAGAGGCAATGCATCTGCCATTGTATAGAGGATGGAAGTGACTCATTTAAGCATTTGTGAGGAGGTAAGAAGTATTGTGCAGGCGTGAATAATTCCTATTTAAAGAGAGCCAAGGTGTATGCATGACCATCGGACGTGCCTCATTCGTCGAGATCTATGAAGAATACAGAAAGAGTATTAGGTGTTTGGGTAAAGAAAGTTTAGTGTAAAGGAGGTACTGGATAAGGGAATATACAACCAGACAACTAGAGACAGTTGAAGCCTTTGGCGCAGCAAATGAAGAAGTATTCGCTTTAGAAATAGTTGTGCTAGATATGAAGCCCCATAATGATTTTGCAGCGATTGGATGCCTGGATGATAGGTAGAGATGGTATCTCCTTCCTTTTCATGATGCTAAGGAAGAAAGCAAGTTCTCCAAAAGAAGGGGGATGACCTAAGTGAATCAAGAAAAGGACATAAAGAGAGTTGAGCAAGGCTTGGCTATTTGGCTTGAGTAGGGGCTAGCCCGATCTCTTGAAGAAAGAATTTTGAAAACTCGTTAAAAGGCGGCACGACCTCAAACATGCACATATATATGTTGCATCCCGTATAGCAAATTGGAGGGAGATGACCTTGTCAATGGGGTGTGGGTAGAAAGCCATCGTCTTCGGGGATCGTATGCTTAATACATATTTTTTTGAGTCTTTATCAATCAACTTGGACGGTATTTGATCTCTAGGATTGTCCAAGACCATCAAAACAAGTCGGTCTTCCTTAGGATGGGCTGGACCATGAGGTTGAGCGGTTAGAATGGTTTGAAGCTAAAACTCTTGTGTTATAGAATGCCTCATCCGAACGGAGTGGATGTAGAGGCTTGGGCAGTAGATGAGACCACTTCTAGAGGAGTAGAAGAGCTAGTGTCGGTTCTGAGATAGGGAGATCGGTTGGTACCAGACATTTCGAATTGAAAAACTTAAGGATGAACGTGGTAAGTTATGCTTTAGTTAATTTTCTATCTTGATTAAAGCCTATGTAACCGATGCACATAGTCTAACAGACATCGACATGTGTTGACCGATCAGATTATGTATATTGACCGAGACAATGTGAAGTGTCAATCCATGTAATGTATTCCTTATTTTTAGAGCACGGTGTATGCGAACGCTGTATGTTGATGCCCACTTGTGCTGGCAAATGGCTCTATCGTGCTATGAAACTTTGTGTTGGATTTTACCAATTATTGTTGAATAAATGATTGCGGTCAATAATGAAATAAATTTTTATTTTGGGAAAGATTCGCTCTTTCTTCCTAATCCCGTGGATCTGAGTTCCTACCCGGTCTTCCACGAGCTAGCGACCATGATTGGTGGATGCGCCTATAAATATCAGTATCAGAACAACGTAGAAATGACATTATTATTTTTTCGATTTTGGATCTCCTATCTCTTTTTTGTACTCATACTTTGCCTCAAATTGTTGTCAAATTCGAATTTACATCATTTTCTAGATTTAAAACATTGTAACTTATTTGAATTGGTGCAAAAACTATTAAAATAAAACTAAAGTGAACGTGGACAGTGATTTGAGGTCGAATCGTTATAAAAATTTGTGTGTTCTTATTGTTTCATCTTATTTTACTTTATATATTCTCGTTTGTAATCGATTGAGGACGTTGTGTCATTTTTTAATGCTAACGGAGAATAAATCTGTTATCGTATCCATTATGCCCCACTTATTAAAGATTAATCCAACGTACATTCCGCTATCGGCTACTCTACTAGTGGATGCGGTGTATGTGAACATGAGGATAATACCTACATAAGACTAGAATTAAGAAGGGATGGCAAGTTAAATGAACCAAGTACAGTGTAAATTCCTCCACACACACATTGGCTTGACAAAACAGTATGACCATATTAGCATATATCCCTACGATTGGATTTTGATTTGAGTGTTTGTAAAATGTGTATAAAACAATGGAATTGATGTGTTACAATAACAACAATGTGGCTTTACCCTATTTACAATTGTTCTCGGGGGATTCGGATCGTGCACATATAAAAATTGTTAGGTGTGAAGGCAGATAGGGTCGGACGCTTGACTAAACAAGTCGTATTTAATTCCCAGCGTCAACCTATGTAAAAGCTCCCCTCGGTCATTTCATTTTATTCCTTTCCTCTTCCCAATCAAAACCAGAAACCAAGACCGAGAAGAAAACATGGAAGACGTTTCGGCTGATATTCACCTCGTTCTCGGCCTGGCCCAATACAACAACGGCGATAACCGTCACAATTCTACTTCTTCCTCCGTCAAACTCAATCACACGTCAAACTTCCAAATTGCCGAAGCTCCTTCTCTGACCCTCGGCTTACGCAACGAAGTGTACGGCTCTCCTAAAGTAAGCACCGACTCCAATTCCTCCATTAAACGCGAGTACGAGGACATGAAGGAGTCGCGATTGTCGTTGTCCAGGACCAGCGACGACGACGAAGCAACTGCGGCCAGGAAGAAGCTCAGGCTCAATAAAGAACAGTCCGCTTTACTGGAAGAGAAATTTAAGCAGCATACCTCTCTTAATCCTGTTAGTCTTCTTCTTCTTCTTCTTCTTTCTTTTATTTTTTGTTTATTCAGATTTAGAATATTTTCTGAAATGATATTTTTGCAATATTTGTAGAAACAAAAGCAAGCACTTGCAAAACAGTTGAATCTTCGGCCACGCCAAGTCGAGGTCTGGTTTCAAAACAGAAGAGCAAGGTACCATTGATTCATATATCAATCTTACTGTGCATAGAAGATAAAGTACTAAAAGAATGAATATGTATATGTAGAACAAAACTGAAGCAAACGGAGACTGACTGCGAAGTACTGAAAAGATGCTGCGAGAAGCTGACGGAGGAGAATCAGAGGTTACAAAGAGAGGTGGAAGAGCTGAAGTTGATCAGAAGCACGACGTCGTCGTCGCCGTTGACAATGTACATGCAGATGCCGGTGGGTCCCACTGTTACTATGTGCCCTTCTTGCAACTGTGTTCGTGGCGCGGGAAGCGAATCGTCAATCATGGCTGCAGGCAGTAGGAGTAGCCCTACTACTAGTCCTTTTGGAAGACCGACTAAATGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_004511801.1	7.9e-44	homeobox-leucine zipper protein HAT22
Swissprot	P46604.1	1.0e-40	Homeodomain-leucine zipper protein HAT22
trEMBL	A0A1S2YY60	5.7e-44	homeobox-leucine zipper protein HAT22

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06710.1	54.92	2e-48	189	HAT14	homeobox from Arabidopsis thaliana

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g493344	AT5G06710.1	193	66	6	141	332	142	314	54.92	2e-48	189
g493344	AT4G37790.1	244	80	9	108	317	4	235	48.36	3e-47	186
g493344	AT2G22800.1	226	92	6	108	317	4	222	49.12	7e-44	174

Ortholog group

Species	Genes
Allium cepa	g493344.t1
Allium fistulosum	AfisC8G04754
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	201	255	55.3	3.8e-15
PF02183.15	HALZ	Family	257	288	39.8	3.4e-10

Gene Ontology

Accession	Ontology	Name
GO:0001101	P	response to acid chemical
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009414	P	response to water deprivation
GO:0009415	P	response to water
GO:0009628	P	response to abiotic stimulus
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009755	P	hormone-mediated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032870	P	cellular response to hormone stimulus
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071215	P	cellular response to abscisic acid stimulus
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071396	P	cellular response to lipid
GO:0071495	P	cellular response to endogenous stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0097305	P	response to alcohol
GO:0097306	P	cellular response to alcohol
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network