result

Gene information

Detail information of g495101

Location

Gene	Chr	Start	End	Strand
g495101	CHR1	230467881	230472228	+

Sequences

CDS

>g495101.t1
ATGAATTCTGGAGGGACCTTCATTTATAATAATACCACTTCACGTGATTTTGCACTCATGTCCTCTCGACGACTCTTTCTCGCGCCTCCTCTATATTATTTTGTGGGAGAAATTTTGCGCTGGATTCGTTCATCAAACCCTAGCTACAACGCAGTTGAGTTTGGATTGAATGGATCAGGTGGGTACTTAAGTGATTTTACTGAATTTTGTGTGCGCTTAAATAGTGAATATGAGAAAGTGGAGAAGATTGGAGAAGGAACTTATGGAGTTGTTTACAAAGCACGTGATCGGCTGACTAATGAAACGATTGCTTTGAAGAAGATTAGGTTGGAGCAGGAAGATGAGGGAGTTCCTAGTACTGCCATTAGAGAAATATCACTGTTGAAGGAAATGCAGCATGCTAACATTGTCAGGCTGCAAGTCGTAGTTCATAGTGAGAAGCGAATATATCTTGTGTTCAAGTATCTAGATCTGGACCTTAAGAAGCATATGGATTCATGCCCAGATTTTGCTAAAGATTCTCGTTTGGCTAAAACATTTCTCTATCAGCTTCTCCGAGGAATTGCTTATTGTCACTCACACCGAGTTCTTCATCGTGACTTAAAAGCCTCAAAATTTATTGATCGACAGACGGCATTTGGTATCCCAGTCCGAACCTTCACACACGAGGTTGTGACACTGTGGTATAGGGCACCTGAAATCCTCTTAGGTGCTCGTCAGTATTCTACTCCTGTAGACATATGGTCTGTGGGATGTATCTTTGCTGAAATGGTGAACCAACGACCTCTATTCCCTGGGGACTCTGAGATCGACGAGCTGTTCAAAATATTTAGAATTATGGGTACCCCAAACGAAGACACATGGCCAGGTGTTACTTCCTTGCCCGACTTCAAGTCTGCTTTTCCAAAGTGGCCGGCAAAGGACTTGGCAACTATAGTTCCAAAGCTTGATTCAGCTGGAATTGATCTTCTTTATAAAATGCTGCACCTTGAACCGAGCAAAAGAATCACTGCTCGGAAGGCTCTTGAGCATGAATACTTCAGGGATCTTGGGACAATTCCATGA

Protein

Gene

>g495101.t1
ATGAATTCTGGAGGGACCTTCATTTATAATAATACCACTTCACGTGATTTTGCACTCATGTCCTCTGTATATGCATGTTTCTTCACTAATATGTTTTTCTACCCTTTGGAAAATTTCACTAAGTTTTCCTTCTCTTTTGTTGCTACCCATGTATTCAAGGAGAAACACACATCTTAAGTATAAATAATTAACAAGTAAGAAAATATTTCAAGCATATGCATGTAAAAATTGAGAAAGATTTGAGGTTTGTTCGGAAAAAAAGCGCAACATTGACACATTGTTGCATGCAACCACTTTGCACAAAACCAAAGATTTTACGGGCTCCTGCTGCAAAAAATCCCGCCTTAAAATAGAAATAAAAACAAAACGAGAATGATTTATTTAACTAATTAATCCCCTCTGTTTATTTCCATATATATAATAGCGACTATAGTCCAGTGAAAGCGACGACTCTTTCTCGCGCCTCCTCTATATTATTTTGTGGGAGAAATTTTGCGCTGGATTCGTTCATCAAACCCTAGCTACAACGTAAGCTTTTTATTCTCCTAGCCGCATTTTTATGTATAATTGTTTGATTTCTTATACGGATTTGATTGATTTATTGTCGGTGTACTGATCCGATCCTGTTTCTCTTATTCGATTTCAGTTGTTAGTAATTTTATAATTCTTTTGTTTGGTTTGGATCCATTTACGCGGATGTAGTTGTTGAATCCTCAACCCCGAGAATGATTTTGATTTTTTTTCGTACGTTTTTGGAAGATTATAATGCTGATTTAGATGCAGTGAACAGATCAGTTCGATTTACAACTTCAGGGAATGTTGATTTATTTTTATTTATTTTTTGATTGCAGGCAGTTGAGTTTGGATTGAATGGATCAGGTGGGTACTTAAGTGATTTTACTGAATTTTGTGTGCGCTTAAATAGTGAAGTAGTGATTTTATGTTTTGAAAGTAATGCGAGTGATTTTTGTGCATTATTAGTATGAGAAAGTGGAGAAGATTGGAGAAGGAACTTATGGAGTTGTTTACAAAGCACGTGATCGGCTGACTAATGAAACGATTGCTTTGAAGAAGATTAGGTTGGAGCAGGAAGATGAGGGAGTTCCTAGTACTGCCATTAGAGAAATATCACTGTTGAAGGAAATGCAGCATGCTAACATTGTCAGGTTATTGCTTTTGTGATTTGTGCATTTCTGTTCGTGCAGAATAAGGATGTTTTTGTTATGCAATCGGTTAGAAGAATTAGTTGTTCTAGTTTCGTTAATAGATCTATGTTATTATTAAATGCAATAAACACATTTTTGTTGTTGGTTAGATTGTTTGAAACAGGTCACTTATTTAGTACTCAGATTTATAGCACATATTATTGCTGTTTAACTGTATTAACAGGTCATGTATGCTAATTTAATACTGTGATTGGACATACCTCAGATTAAGATGATATTTATGCTACTTTATTGTTGTCAACACCTATTCTATTTACCTCAGCTAGAAAAGCGAATGCTTGCTGAAGGGCCATGAAAACTCATATAACTAGTGATTTATTGATCTCCGGTTATTTACTGATAGTTACCTTTACATTACTTAAATTGCCTTGATAATACATGGGTGTAGCATGAACTACCATTGCTCACAGGCAGCTATAATATCAGTTGTCATTACACCAGTTCACATAGAGAGCAGAAGTAAGGAATGTCTACTGTCCTGGTAGTTGAAGTTTTTGATAAAATAGCTTCATGAAGCATTCTGAATGTGTGAATTTGGATTTTAATTTTTTCAATCTATATGCTGGTAAAGCATCTGTATACATTTGTCTATGTCATTCTAGTCATTCTGTATACATCAATAATCTATATGCAAATGGCCTATTGAATTTTTATCCTCTTTTTGCTTATTTAGATTTTTTATTTTGACCATTTGCATGAAATCAGTCTATTAATGGCCAAAAGATACAAGGTTGAGGCAGTCTATGATATTCTTTTTTGCGAGCATTTATGGTTGGCATATTTCTTTTGGAAATCTATTATAAAATTTGTAATTGTTCTGTCATCTTTTCCACATTAATATTGGAGTTCTTTTACAACATCATGCCAGTAATTGAGCTATAAAGAAGTTGTGTTAAATGACCTAAACAATTTTGGCATGCCAGGCTGCAAGTCGTAGTTCATAGTGAGAAGCGAATATATCTTGTGTTCAAGTATCTAGATCTGGACCTTAAGAAGCATATGGATTCATGCCCAGATTTTGCTAAAGATTCTCGTTTGGCTAAAGTAAGTTCTTCTTTGCAGTCTTGATTCATAGTCAAACAAAACCACCACACACCCCCCTCCCCTCTCCCCTCCCTCAATACCCTCACTCCGTCACACATATATTTGGTCTTTGAAACGCCAAAGTGAGAACTGTTATCTTTAGATGAGAGCGTATTTGTTTTGAAATTTAACATCGGACGCTAGTATGATATTGTATTATTGTTGTTGGTTACCCCTTCGTGCTTTACGTTTCTTCACGCTAAAGCCTTTAGTAAAATTTATTATTCGATGAATTCAGGTATTGATTGTAGCCTTTCTTGTTTAACGGTCTTATTCTTTTTACCTTTTGCAGACATTTCTCTATCAGCTTCTCCGAGGAATTGCTTATTGTCACTCACACCGAGTTCTTCATCGTGACTTAAAAGCCTCAAAATTTATTGATCGACAGACGTACCAATTCATTAAAGCTTGCTGACTTTGGACTTGCAAGGGCATTTGGTATCCCAGTCCGAACCTTCACACACGAGGTAGCATTGTGATCCCTATGTCTTCCCCCTGATAGCAGTATAGCTTTGTATATCATCAGTAAATGTTATACTTCGTCATATTTTATTAAATTGAACATGGTAATTGTTCACACTGGTTGGTTTGTCTTTTCTTTTGAGATGCCCAGCTTTAACAGCTACATTATACTATGTTTCTATGTATATCTTAGCAAGCAATTTAGAAACAATAGTTTACTTACGTATGTGCTCCTCTTAGGTTGTGACACTGTGGTATAGGGCACCTGAAATCCTCTTAGGTGCTCGTCAGTATTCTACTCCTGTAGACATATGGTCTGTGGGATGTATCTTTGCTGAAATGGTGAACCAACGACCTCTATTCCCTGGGGACTCTGAGATCGACGAGCTGTTCAAAATATTTAGGTTCAATAATATCATCCCCTTGATCTATGTTTGCATCATTGAATTTTGGAAGATGCTTAGTCTCATTTTATATTTTTTTTAAAGAATTATGGGTACCCCAAACGAAGACACATGGCCAGGTGTTACTTCCTTGCCCGACTTCAAGTCTGCTTTTCCAAAGTGGCCGGCAAAGGTGCTAAGCAAACATTTTTTTCAACCTATGTTTTCTTCATAAAATAGATTTATGTTAACCTGAATTTTTAAATTGATTCCCTCTATGCAGGACTTGGCAACTATAGTTCCAAAGCTTGATTCAGCTGGAATTGATCTTCTTTATGTAAGTTCGATATCTTATACTGATATCTAATCATGCTTCTTATTGCAACTCATTCCGGCAAGGGCATACTTAGTGGTTTTCAAGTTATTTTCCCAACGGATAATTAAGAAGATTTATAGAATATACAGCTAATGAAGGTAGGGGTATTGGAGATCATGGATTACGAAAAGTTGGGCAGGCAAAACTATTTACTGTTGGGATATACAATTATCAAACTTGTATATAATTGCTTAGAAAAATTAGAGTGATTTGTGCAAAATGTTTACATCCCAGAACAACTACGAAGATCTAGCATCACTCTCCCACAGAGATTGATACAACATTCTCCCATTTATTGGTTGAGAATGTAATCTAGGAATTCTCTTCGCATTGTGATAGTGATGAATGTCTAGACATTGAAAGTATGTACCTATATTCTGAGTAGTGAGTAGTCTCACGATTATGTTACCAGTATGATCATTTCTTTCAGACAAAATTTAGCATTATTATGAGCAGCCAAATCAAACATAGTGCATTAATTTGTCTAAACCTGTTTGGGCATAAAAATGAATGTGAACATCATCATTCCAGATGCTGTTTTCACGTATTAGGTACTGTGTTGCATCTATATATTAACTCCGACATCTGCTATACTTTCATAACAACAATGGCTTCTAATGCTTTATATGTTTGCCTACCATCCTGTTATTTATTCACAACAACAATGCCCGTTTATTGATACAACCTGTTATTTATTTGGTCTCACTGTTATATTTGTATGCAATCAGAAAATGCTGCACCTTGAACCGAGCAAAAGAATCACTGCTCGGAAGGCTCTTGAGCATGAATACTTCAGGGATCTTGGGACAATTCCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	BAA21673.1	7.5e-151	cdc2 kinase
Swissprot	Q38772.2	3.4e-140	Cell division control protein 2 homolog A
trEMBL	O22292	5.4e-151	Cdc2 kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48750.1	78.42	9e-134	473	CDC2;CDC2A;CDC2AAT;CDK2;CDKA1;CDKA;1	cell division control 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g495101	AT3G48750.1	292	50	2	76	354	3	294	78.42	9e-134	473
g495101	AT1G20930.1	295	123	7	77	350	16	309	50.85	9e-82	300
g495101	AT2G38620.2	305	122	6	76	350	3	306	49.84	7e-81	297

Ortholog group

Species	Genes
Allium cepa	g495101.t1
Allium fistulosum	AfisC1G04281
Allium sativum	Asa4G06413.1
Arabidopsis thaliana	AT3G48750.1
Oryza sativa	LOC_Os02g03060.1; LOC_Os03g01850.1; LOC_Os03g01850.2; LOC_Os03g02680.1; LOC_Os03g02680.2; LOC_Os03g02680.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	77	347	209.7	4.4e-62

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0007017	P	microtubule-based process
GO:0000226	P	microtubule cytoskeleton organization
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000278	P	mitotic cell cycle
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0051726	P	regulation of cell cycle
GO:0003824	F	catalytic activity
GO:0007010	P	cytoskeleton organization
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005819	C	spindle
GO:0005856	C	cytoskeleton
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006259	P	DNA metabolic process
GO:0006281	P	DNA repair
GO:0016570	P	histone modification
GO:0006325	P	chromatin organization
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006974	P	cellular response to DNA damage stimulus
GO:0006996	P	organelle organization
GO:0007049	P	cell cycle
GO:0044772	P	mitotic cell cycle phase transition
GO:0007346	P	regulation of mitotic cell cycle
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0015630	C	microtubule cytoskeleton
GO:0016043	P	cellular component organization
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016569	P	covalent chromatin modification
GO:0016572	P	histone phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0022402	P	cell cycle process
GO:0033554	P	cellular response to stress
GO:0030154	P	cell differentiation
GO:0032502	P	developmental process
GO:0044770	P	cell cycle phase transition
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044430	C	cytoskeletal part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051445	P	regulation of meiotic cell cycle
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0072686	C	mitotic spindle
GO:0090304	P	nucleic acid metabolic process
GO:0097472	F	cyclin-dependent protein kinase activity
GO:1901360	P	organic cyclic compound metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:1903047	P	mitotic cell cycle process
GO:2000241	P	regulation of reproductive process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K02206	CDK2; cyclin-dependent kinase 2	EC:2.7.11.22	FoxO signaling pathway	ko04068
			PI3K-Akt signaling pathway	ko04151
			Cell cycle	ko04110
			Oocyte meiosis	ko04114
			p53 signaling pathway	ko04115
			Cellular senescence	ko04218
			Progesterone-mediated oocyte maturation	ko04914

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network