result

Gene information

Detail information of g496294


Location
GeneChrStartEndStrand
g496294CHR56501168265030436-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020241563.10.0e+00phosphoinositide 3-kinase regulatory subunit 4 isoform X1
SwissprotQ9M0E5.10.0e+00Vacuolar protein sorting-associated protein 15
trEMBLA0A6I9SDZ40.0e+00non-specific serine/threonine protein kinase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT4G29380.157.930.01690AtVPS15;VPS15protein kinase family protein / WD-40 repeat family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag496294.t1
Allium fistulosumAfisC5G04847
Allium sativumAsa6G04942.1
Arabidopsis thalianaAT4G29380.1
Oryza sativaLOC_Os02g55340.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain2929278.93.5e-22
PF02985.19HEATRepeat51354020.70.00028
PF00400.29WD40Repeat1038107431.22.5e-07

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0000011Pvacuole inheritance
GO:0000151Cubiquitin ligase complex
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0019898Cextrinsic component of membrane
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0032784Pregulation of DNA-templated transcription, elongation
GO:0016020Cmembrane
GO:0003824Fcatalytic activity
GO:0016192Pvesicle-mediated transport
GO:0004672Fprotein kinase activity
GO:0004674Fprotein serine/threonine kinase activity
GO:0007165Psignal transduction
GO:0035556Pintracellular signal transduction
GO:0008104Pprotein localization
GO:0007033Pvacuole organization
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005635Cnuclear envelope
GO:0005643Cnuclear pore
GO:0005737Ccytoplasm
GO:0005768Cendosome
GO:0005770Clate endosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0005942Cphosphatidylinositol 3-kinase complex
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006605Pprotein targeting
GO:0006623Pprotein targeting to vacuole
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006810Ptransport
GO:0006886Pintracellular protein transport
GO:0006914Pautophagy
GO:0006996Porganelle organization
GO:0007034Pvacuolar transport
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0032786Ppositive regulation of DNA-templated transcription, elongation
GO:0009056Pcatabolic process
GO:0009555Ppollen development
GO:0009846Ppollen germination
GO:0009856Ppollination
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010008Cendosome membrane
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0012505Cendomembrane system
GO:0015031Pprotein transport
GO:0015833Ppeptide transport
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0016236Pmacroautophagy
GO:0016301Fkinase activity
GO:0016310Pphosphorylation
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0016740Ftransferase activity
GO:0016772Ftransferase activity, transferring phosphorus-containing groups
GO:0016773Fphosphotransferase activity, alcohol group as acceptor
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0048017Pinositol lipid-mediated signaling
GO:0022414Preproductive process
GO:0023052Psignaling
GO:0030242Ppexophagy
GO:0031090Corganelle membrane
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031410Ccytoplasmic vesicle
GO:0031461Ccullin-RING ubiquitin ligase complex
GO:0031967Corganelle envelope
GO:0031975Cenvelope
GO:0031982Cvesicle
GO:0032182Fubiquitin-like protein binding
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032507Pmaintenance of protein location in cell
GO:0032968Ppositive regulation of transcription elongation from RNA polymerase II promoter
GO:0032991Cmacromolecular complex
GO:0033036Pmacromolecule localization
GO:0033365Pprotein localization to organelle
GO:0034067Pprotein localization to Golgi apparatus
GO:0034243Pregulation of transcription elongation from RNA polymerase II promoter
GO:0034271Cphosphatidylinositol 3-kinase complex, class III, type I
GO:0034272Cphosphatidylinositol 3-kinase complex, class III, type II
GO:0034613Pcellular protein localization
GO:0035032Cphosphatidylinositol 3-kinase complex, class III
GO:0036211Pprotein modification process
GO:0042886Pamide transport
GO:0043130Fubiquitin binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0044232Corganelle membrane contact site
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044248Pcellular catabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044425Cmembrane part
GO:0044428Cnuclear part
GO:0044433Ccytoplasmic vesicle part
GO:0044440Cendosomal part
GO:0044444Ccytoplasmic part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0044706Pmulti-multicellular organism process
GO:0045053Pprotein retention in Golgi apparatus
GO:0045184Pestablishment of protein localization
GO:0045185Pmaintenance of protein location
GO:0045324Plate endosome to vacuole transport
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0046907Pintracellular transport
GO:0048015Pphosphatidylinositol-mediated signaling
GO:0048229Pgametophyte development
GO:0048308Porganelle inheritance
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051179Plocalization
GO:0051234Pestablishment of localization
GO:0051235Pmaintenance of location
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051641Pcellular localization
GO:0051649Pestablishment of localization in cell
GO:0051651Pmaintenance of location in cell
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0061695Ctransferase complex, transferring phosphorus-containing groups
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0070727Pcellular macromolecule localization
GO:0071561Cnucleus-vacuole junction
GO:0071702Porganic substance transport
GO:0071704Porganic substance metabolic process
GO:0071705Pnitrogen compound transport
GO:0071840Pcellular component organization or biogenesis
GO:0072594Pestablishment of protein localization to organelle
GO:0072665Pprotein localization to vacuole
GO:0072666Pestablishment of protein localization to vacuole
GO:0080008CCul4-RING E3 ubiquitin ligase complex
GO:0080090Pregulation of primary metabolic process
GO:0097708Cintracellular vesicle
GO:0098588Cbounding membrane of organelle
GO:0098796Cmembrane protein complex
GO:0098805Cwhole membrane
GO:1901564Porganonitrogen compound metabolic process
GO:1902494Ccatalytic complex
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990234Ctransferase complex
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0061919
GO:0120095
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08333PIK3R4, VPS15; phosphoinositide-3-kinase, regulatory subunit 4EC:2.7.11.1 Apelin signaling pathwayko04371
Autophagy - animalko04140
Autophagy - yeastko04138
Autophagy - otherko04136

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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