result

Gene information

Detail information of g497536

Location

Gene	Chr	Start	End	Strand
g497536	Scaffold_87854:HRSCAF_470940	12765	16907	+

Sequences

CDS

Protein

Gene

>g497536.t1
ATGTCAAAGGCAACCGATAATGCATGTCTAAAGTGTGTGATTGACTACATATTAGATTGTGAGAAGAAAGAAGAAATCAATAAAGACAATGTCCTTTACATTATGGAAAATATTAATGTTGCAGGTATCATCTTCGCACTCATGGTTATTTTCATATTTTACTAAATTCATGTGTTTGGCATTTGGGTTTTTTTAGTCTGACTATAATTTACTTCCCTGTTGCTCTAACATTAATCCACTGAACCTCAGTTACTGCAGTCATTACTATAGTCTGGTTACTAAGTTTATTTGAGCAAGTTGTACTAATCTGACATTAAATCAAGCATTGGAATTGTTAAATAGGTGTATAGTCGATAAATTTTTCACTATGTATATTCAAATACAAATTTGATTTATGGTTTTATTATGCAATATAGATTGTAGCCTAATAAAATGGTTGTTTTTTAGGTTTGATGTTGACTTGCAGACCATTGTGTTTGTTAAAATTGTTATAATACTAGTAATCGTTGTAATTATTGCTTAATTTAATAAACGTAGTAAACTGCTATCACATCATTAATCTGTTAGCATGATTCATGGATCTAATGAGTTGTATTTTTGTATGTTAATAAACTGAATACTACAATCTACGTCCACTGAAATATGATCATCCCAATCTTGTAAAATGGTTGTGCTCCTATGATTGAGGATCATAGGGAGTTATGTGATTAAATGAAATAAGGCTATCAATGTGCTAATGGTGTTGACATGGATTGTTGTTGGGTGTAGATCTCATATTACAGTTTTATAAAGTGCCTACTAAAGTTTATATGTATACTAATATGGTTGATACATATAGCTTTTTAGTTCATATATAAATTTATACATACACTAATCATCAGATATAGATAAAACATAAAACTTTATAATGCCCACGAATTATTTTTTCATTTCAACTTAGTTCATGGTAAATATATGTACTATACTTGACTAATATTATGAACTAATATGCAGCATGTGAATATATGTGAAATATATACTGCATGCCATAGACTATATGATCTTATGTGTGTGTTAATCTTATATTCTTATTATTCAAGTCTCAATCATACATGTTAACTGCTCATATGTATCTTTGGACAGAACTGGAGAAAGTAGATTAGAGTTAACTTAACCTATAAAATCTTTGGACATGGAGTGCTGGAGAATGGAGTCTGCAATTTGCAACTTTGCAGGAATTTAGTTTTAATGTATTCGTTCTCATTGTATTGTATGCTTACGTTATTGGGACTTTGTAGTCGTAGTAATGTTGACCTTGGAGTTTAAAACTGTGAATCACTAATGTATGTATTATTGGTAATGTATTAGTTGTCTAAACGAACTTTGAATATTTGTTAATGCACTGTTGTGTATACATATTCCTTAGTTTACTACTGCAGTCATAATTGATATTTATCTTACTTTAAATGGTTAACCAGTTAATTTTAACCGTGGTTTTAACGGTTAACCGTTTAAATTAACCAGCTAACCGCGGTTAAAATTAACCGGGTTCGGTCAGTATACCCCTACTAACATTAATCGAATAGTGTTTAACCGAACCGACTTAAATACATGGTTAACCGAAAATATTAACCGATCGGATCGATTAGCCGACCATGCCCACCCCTAGGAGATGTTGCCATGAGCATACCACAGGCCTGCATGTAAGCGAACAAAGGCCCACCTGTATTCAACTCCGCTCAAACCTGGAAAAGAAAAACTCTATATAATCCATTTTTCCTATTGGCTGACCTAGTCTCGTTGCAAATTAGGGTTTTAGTTTTCGTCCCTAATATTGGTACTTGATTGTAGCAAATGGCGTATGCAGCTATGAAGCCATCCAAACCCGGGATGGAAGAACCATTGGAGAATCTCCACCGCATCAGAATCACTCTGTCTTCGAAAGAGTATCAAAAATCTCGAAAAAGGTATTTTGGAAGCCCCCGTTTAGCTTGTTCTCGTTCGTTCTTAATATTAAAATATTTTATGATGATTTTGTTTCCATGTAGTTTGCGCTGATTTGTGAGAGGAGCTAAGGGTAGGAAGCTTGCGGTTAAAGGTCCAGTAAGAATGCCAACTAAAACCCTTCGCATTACTACTAGGAAGGCTCCCTGTGGTGAAGGTATAATTTTCTATTTGATATTTTCGAGCTATTCTTGTTATCGTGCAGTTATTTTATGCGATTGACGATTGATGATTTCATAAATAATTCATGTGATTCGGATAAGGGATGCGTGTGAGCATGTGTATATATGTGTGTGTTCCTTGCTTTGTTTTATACACACACATATACAAACACTCACACACATACATGGTGTTGGTTGCTTTGTTTTATATAGGTTTGCAGAAGAAATTTTTGTGGTTGTAACTTTACTTTCTTAAAATTAACAGACTATTACCATTTGTTGCCAAATTAATTGTAGCATGATATACAGAGGAAATGGTACTCTAAACCCTGTGGTGGCATTTTTCTTTGGAAGGTGTAGTTGATCGAATATTTTATATCAATTATTAGCTATGTTGATGTCAAATATATGAATGAGTGCTTAAATAATTTGTTTTAAAAATGACGTTTATTAAAAATCAATCACGCATATTCCTTTGAGCACATACTCTACTGCTCACAATGAACAAGTTACAATTTCAATTAAATAGACATTGGCCCTAGTCAATGAAATATCCAATGAGAGCTTTTTAAAGTTGATACGCAGTCTTTCCCACTTTATTATTATTAATTAATATTATAATTGAAATTATGCTGTCGACATGTTTATTTTTTGCATCCGCTTGACCTATTTGGGAATTTAAAAGATTTTGGCATTATCACCAAATACATTCTCCAAATATGCTGGAATTTGTATCATTATTTGATATTATCCTAATAATGTTTAAAAGTTTTGGAGTTAATTGTACTATATAACAATAGTTAGTCATTCGCAATGGGTCAATGTATGAGGCTAGCATGATGAGCAGATGATGGTAATACTATTATGGTATTGAGACTCGTCTTTGAAATATAAAAATCGAGCTTTTTAAAACTGATGCTCAGTCACCTCAATTGTTAAATCAATTAAATGAGTTATTTTGAAAAAAATGGTGGTAAAATTGAAATTAAATTTGCAGAATGCAAGTGCATCTCGTATCTGTTATCAGCTATGCTGATGCCAAATGTATACGTTGGCGATATTTCAAAATGTGTTTGATTTCAGATTAATACTACACATTCTTTTGAGCACTTCATGACTGAATAAGTGATGATATACTTATTAATTGATATCGAGACTTGTCAATGAAATATCAAACTCGAGCTTTTTAAAACTGATGTTCAGTCATTTGATTATTCGTAGATATGATCATTGTTTGATGTTAGCTTGATACAGGGTAAAAGCATAGACATGCTTTCATTTCCCATAATTGTCGGCCATTGCAGAACATAAATGTCAAATGACGATAAAAGGGCAATTTCTGTTGTTAACGTACTGAGCAGAAGATGATAATACTATTACAGTTCTGAAATTCATTTTTGATGTATACAAATCGAGTTTTTTAAAACTGATGCTCGGTCACATTATATTATTAACCACCAAGGGAGTTAGTTATTTTGGTTCTGTGTGTGTACACATGATTTACCCTGTCAATTTGAAATATAGTTGTGAATGAATTAAAAGTTTTAAAATAATATTTTCTTTATCTTGATAAAATTATCTTATGTATCCACGTGATTTCTGAATGGAAATTTTGGACACATAATACAGAGGATTTTGACAACTACAGAGGATTTTGAGGGGATTACGAAATATGGGGATTGGAGCCTTTTTTTTTGGGTATATGAAACTGTACTCGATGTCCTTTGAAATTATGCTGCGTTCATTTTGTAGTCATTGAATATATATAAGCTGTGACAAATTTGTTTGTATTGTTCTATATTTATGCTGATCTGGATTTGGTTTGTACACTCAGTTACATATTATCGGATAATTCGGGTCAGTTATTTACTTCTGTTTAGCTGGCCAGTTATGCAAACACAGTTAAATTCTAAAATTTTCTTTCTATTCAGGCGATTTCTGTTCGCATTCTATGTTTTCTATATGTTTGACAGTCGGCACATTTTGCGAAGAAAAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	PQM37499.1	2.1e-18	chloride conductance regulatory protein ICln
Swissprot	P49200.2	2.0e-18	40S ribosomal protein S20-1
trEMBL	A0A314URY2	1.5e-18	Chloride conductance regulatory protein ICln

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G47370.1	64.00	6e-21	95.9		Ribosomal protein S10p/S20e family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g497536	AT3G47370.3	75	21	1	52	120	1	75	64.00	6e-21	95.9
g497536	AT3G47370.1	75	21	1	52	120	1	75	64.00	6e-21	95.9
g497536	AT3G47370.2	75	21	1	52	120	1	75	64.00	6e-21	95.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00338.19	Ribosomal_S10	Family	82	120	28.1	1.6e-06

Gene Ontology

Accession	Ontology	Name
GO:0022627	C	cytosolic small ribosomal subunit
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0002181	P	cytoplasmic translation
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0003729	F	mRNA binding
GO:0003735	F	structural constituent of ribosome
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005198	F	structural molecule activity
GO:0005488	F	binding
GO:0005840	C	ribosome
GO:0005618	C	cell wall
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005730	C	nucleolus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005844	C	polysome
GO:0005911	C	cell-cell junction
GO:0006412	P	translation
GO:0006518	P	peptide metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009506	C	plasmodesma
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0015935	C	small ribosomal subunit
GO:0019538	P	protein metabolic process
GO:0022626	C	cytosolic ribosome
GO:0030054	C	cell junction
GO:0030312	C	external encapsulating structure
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032991	C	macromolecular complex
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0042788	C	polysomal ribosome
GO:0043043	P	peptide biosynthetic process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0043603	P	cellular amide metabolic process
GO:0043604	P	amide biosynthetic process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0044391	C	ribosomal subunit
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044444	C	cytoplasmic part
GO:0044445	C	cytosolic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0055044	C	symplast
GO:0070013	C	intracellular organelle lumen
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1901566	P	organonitrogen compound biosynthetic process
GO:1901576	P	organic substance biosynthetic process
GO:1990904	C	ribonucleoprotein complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K02969	RP-S20e, RPS20; small subunit ribosomal protein S20e	EC:-	Ribosome	ko03010

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network