result

Gene information

Detail information of g497542


Location
GeneChrStartEndStrand
g497542Scaffold_87854:HRSCAF_470940105301116285-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010941043.11.6e-2740S ribosomal protein S20-2
SwissprotP49200.29.0e-2840S ribosomal protein S20-1
trEMBLA0A6I9SK411.1e-2740S ribosomal protein S20-2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G45030.179.739e-30 127Ribosomal protein S10p/S20e family protein

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Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00338.19Ribosomal_S10Family7312747.41.5e-12

Gene Ontology
AccessionOntologyName
GO:0022627Ccytosolic small ribosomal subunit
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0002181Pcytoplasmic translation
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003723FRNA binding
GO:0003729FmRNA binding
GO:0003735Fstructural constituent of ribosome
GO:0016020Cmembrane
GO:0005829Ccytosol
GO:0005198Fstructural molecule activity
GO:0005488Fbinding
GO:0005840Cribosome
GO:0005618Ccell wall
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005730Cnucleolus
GO:0043231Cintracellular membrane-bounded organelle
GO:0005844Cpolysome
GO:0005911Ccell-cell junction
GO:0006412Ptranslation
GO:0006518Ppeptide metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009506Cplasmodesma
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0015935Csmall ribosomal subunit
GO:0019538Pprotein metabolic process
GO:0022626Ccytosolic ribosome
GO:0030054Ccell junction
GO:0030312Cexternal encapsulating structure
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0042788Cpolysomal ribosome
GO:0043043Ppeptide biosynthetic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043603Pcellular amide metabolic process
GO:0043604Pamide biosynthetic process
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044391Cribosomal subunit
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044444Ccytoplasmic part
GO:0044445Ccytosolic part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0055044Csymplast
GO:0070013Cintracellular organelle lumen
GO:0071704Porganic substance metabolic process
GO:0071944Ccell periphery
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1901566Porganonitrogen compound biosynthetic process
GO:1901576Porganic substance biosynthetic process
GO:1990904Cribonucleoprotein complex

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K02969RP-S20e, RPS20; small subunit ribosomal protein S20eEC:- Ribosomeko03010
K08679E5.1.3.6; UDP-glucuronate 4-epimeraseEC:5.1.3.6 Amino sugar and nucleotide sugar metabolismko00520

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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