result

Gene information

Detail information of g497977

Location

Gene	Chr	Start	End	Strand
g497977	Scaffold_87916:HRSCAF_471002	507076	512423	+

Sequences

CDS

Protein

Gene

>g497977.t1
ATGGGAAGGGGGAGGATTGAGATTAAGAGGATCGAGAACTCAACGAATAGGCAGGTCACCTTCGCTAAGAGGAGGAATGGAATTATCAAGAAAGCGAAGGAGATTAGTGTTCTTTGCGAGTCAAAGATTGGGATTGTTGTCTTTTCCAGTATGGGCAAAATGAGTGAGTACTGCAGTCTCAATACTAGGTATGCTTTTATTCTGTTTTAGAGCTTTAAAATTTGAGATTTGAGTGGTTACTTGTATGAATACTCATTTAGATTTTGTATGAATATTTAGTCTTTGGTTGTTGCGGCATTGATTTTCTAAACACTAGATCGGTGTAGATAAATCTGGAAAACAATACTAGTCATCCTAACTTAGATTTGGATCTTTATTTGTGCTTATTTGAACTATACAGTGGCAATGCTGTTTTTTTTTCAGTGACATAATTTTGTGGATCTTATCCATGACATCACTGTTGATGAAACTTTAATTCAATATGTAAGCTTCACAATCTACATTTATAAGGTAACATAAGAACTATGTAGTGGAATAGAACTTTGAATGATGACATGCGGATTAGTTTTTTTCTTTCTCTGCCTTTCTACTAATCCAGCAAGATCTGCAGAATGGCCTGTTTACATTTATAGAAGTTCAATTGATATTGTTCCTTCAATTTGTGATTGTTCTCGAAAGTCTCTAGCGTTGCTTGTATACATAATTTTTTTTTTTTTTAATGTGAAGTTTTCCATCACTCTTGGAAGAGTATCAACAGCACTCTGGGAAAAAGATTTGGGATGCAAAACATGAGGTAGAACGCAAATAACTAATTTGTTCTCACTTTTCAAAGTGAAGGTCAAGCTAAAGCTGTTACTTTACATATGTTTTATAGAAACTGCAAGCAGAGATTGATAGGATTAAAAGAGAGAATGACAACATGCAGATTGAGTTGAGGTTGTGATTTCTATATGTCCAACTAAAAGCTTCCTTGTCTATTTATAGAAAGAAAAAACAATGCAATAATTAGTTTGTGCTATTGGACGTAGGCACTTAAAAGGTGACGATATCAACTCTTTGCAGCCTAAGGAACTCTTACCTATCGAAGCGGCTTTAGAAGATGGTGTAGCTAGTGTTCGCAATAAGCAGGTAGCATTGGTTTATTGTACTCATAGTTTTGAATTTGTTTTCTGAAGATTAAAAGTAAAGGGAAGTACTCTAAATTTTTTTTACATTGCTAGTTTTTTTCCATGGTAAAGCATGAAAAGATATTCTGATTTTGACCATCATCAAACAGTTTAATTTCATAATATAACCCTTGTCATGTTTTGCTTGGATCGCCTATTGTTTGAATTGCAAAAGGAGTTATGATTTATGAAATAAAGTTCAACTATAACAATCTTTTGCTTATGTTATGATGCAGTTCAGTTATTTTAGATTTGTAGTATCTGAATTGCTTTACATGTAAAAAATTATTTATTCCAATTTGTCACTGACCTGATGATAAGTTCAAAACACAATGCATGAACATTGTTAATTTAGCCTACAGTTTTCCAGCTTCCTGATAATAATATTAAGCAAGAACTGTTATGCACAATATCCAAAAGAATTTCAAAGTTTGCACCTTTTAGTTTTACATTGCCTTGTAATTTTTAACGAAAAAGCTAGGACAGATACAGACTTTTTATTCAGTGTTTACTTTCAATTCATATGACGTGCTATCATTTTGCAGATGGAATATCTGAAGATGCTCAAGCTAAACGTATGTTTCTAAGAGCAAAAAAAAGGCCCTTTTACATTTTTCTTGCTAGCCGTTCATTGTTTTGTCTTTTAAGTTAAAATTGGTTTCACAATTTTGCGCTGATACAAATTGTGCAGGGTAAAATCCTGGAAGAGGAGAACAAGAAGTTGAGCTACGTTTTGGTAACTGATCTCGATAAGTCAAACTTACTCTATAAAATTTTGAGACTAGTCATCTACATACACTTCTTGTTGAATAATTCAAAAAATAAATGAAAGCCTAGTTTATTTCCGGATACTAGGGTAGCTTTCACATGGGTAGCTTTCATATTTGCGACTATCTTTTTTTTTTTTTTTTTTTTTTTTGGAAACTAGAGAACCAACGTGTTAACCACTCGGGCTTCCCATTGGGTTTTCTAAGAAACAATAGAATAATTTTCGAATATTAAACAACAACAACTACTACTAAGCCATTATTCCCAAACAAGTTGGAGAATTTTCGAATATTTAAAATAAATCAAAATTTCCAAAATTAACCTCAGTTTTTTAAGGAAAAATCAAGTATTTAGATAACTAAATAGCATTTGGTTTGAAAATAAATTTTGTATTTTACGTTTTCAACGTTTACTTTAAAATGCACGGGAGAGGAGAAAGGGGTCAAAAAAAAGATCGATTTGAATAATGATTTTAACATATAAAATTGAAAATGATTTTTTTCTTGTTTTCCGCCTTTTGGAAAGTATCAAAAATTATCCCCTTCCTTCCATCTTCCTCCTTTGTTGGAATGACTAGGATTTTCCAACTCCTTTTCTTCTATGCCATTTAACATATATATTGAAAACGCAAAACGCAAAGCTCCTTTCCAAGCCAAACACTGCCTAAACTCGACCTTTTTTTTAATAAAAAACAAGGAAGAAGTGATATTGTCAATGGAATCTTTTTTTTCCCAAGAGAGGTTTCATTTTTCTTTTTTCAAATATTTTCATAAAATCAAATAAATTCAATGTTGTCAGAGTTAAAATTTGATAAAAAGTTTATCTTATCTTTCTTGAAAGTGTATTTCTCGAAAAAGTTTGAAAACTTCTTCGAACATTCTGAAACACTTTTTTGATACTGTAGAAAGTCTTAAAGAATTTGAAAAAATCATAATTAAAAAAAATATTCAAATAATCATTAAAGTGCTAAAAAACAAAAAATTCATAAGAAACATTTCAAAAAATCCAACAAAAATCTAAACCTGAAACTAACTGATTGATGGTTTTAGGAAGGAAGGTATAAAATAAATATTTTATGCGCGATTCCATCAAAGAAGAAAACATAAGAAAGAAAGGCGATTTGTACTAATTCTTTAAATATGTCTCTAAGCCTCTCACTGTATTTTTCTTAGAATTGCTTGAAACAATTAATTCATGGTTTTATTTAATAAACAAATAAAGATAAATTTTGAATATTTATTGCTTTACAGGAAAAAAAAATTAATGAACACAAAGAATATTCTCAATAAATTCAAATATTTTACTAAATCAAACCTTTTTCATAAAATTTCAATTTTTTCATAGAACATAAAAAATTATATCAAAAAATGGAAATTTTTTAAAAGTGAAAGTAGCATTTGGTTTGAAAACGAGTTCTATGTTGCAACAAAATTTGGTAATTTTTAGAAAAGTAAAACTTTCCGAAATATCAAAAATATTTTAAATAAAACTTTATTCCTTGAAATCCAGAACTTTTCTGAATTTTTTTTACAATTTCTTAAAAATCAAAATTAGAATTATCCAAAAAATCTATATTTCAAACAGTCTCCTTCTGAATCTCCGATCAAATTTCTCATGCCGATTTTTTCATAGTTTTTTAACAAACAAAATGAGATAAAATTCATATTCCTAGAGTTTAGAAAATTCAATTCCTTTAAAAGAATCATTTTGTTTTCTCTTCATGAAAATAAAATAATTTAAAGGAGATCTAAACTTTTCAAAACGGTTGAATTTTTCCCTTTTTATAAATTTTCTGAAAAATAAAGCATTCTCTAAAATCAAATTGATAAAAAGTTCAATAAATTTAATTGATTTAAAAATTCACTTATTTTTACTTCATGGAAAAAATTATATTAAAAAGATATCTAATTTATTTGAAAAAGTTCCAAGTTTTTCAGAAAAAATCAAATGTTTAGAAAAAAAAAGGTTGAAAAGATTCAGTTAATTTAGAAAATTCATTTCTTTTTTCTTCATGAAAATAAAATATCCAAAAGTAAATCTAATTTTCCCAAAAAGTTCCAAGTATTAAAACAGACAAATATTTTTAAAATAAATAATGATCTAAATTCATAAAAATTACCCTTCCCAAAAAGTTTGCCTTTTTAAAAAGATTGAAATTTCTCATAACATTTTGTAAGATTTAAATTATTTCAAGTAAACTCAACAGTAATAAGAAGTTATAAAAACTATTCAGAAAATATTAAAAAAAGAAGAGGAAATTAGCCACAAGGGCCTTTTTAGCAAGTGCAGTTAGTTTTTATGACATACAACTGAAATAATTACTTTTAAGGACAAAATTCAAAATAATTAGTTTTTAGGACCTAAAAACCTATGTAAATGTCCTTGAAAGTAATTAGATTGCTGATTTTGTCTTTAAAAGTAATTATTCTGCTAAGTTTGGCCTTGAAATTAATTTATGTGGATGTGTGTCCTACATACTAATTGGACTGCAAAGTTTGTCCTTTTAGTGAAATGCCATATTTTGAACATTAAAAACGAAGACCTGTATATAACATGGTATATTATAGTATTTCAACGGGTTGGACCTAGTTTTCGATATGTGGTCAGGAGCAATTCTTTTATTATTCACTTAATCACATGTTTTACACTTTTAATAGGATTAAGTGAATAATAAAAGAATTGCTCCTGACCACATATCGAAAACTAGGTCCAACCCGTTGAAATACTATAATATACCATGTTATATACAGGTCTTCGTTTTTAATGTAGAAAATACTAAATAGTTTTCGTAGAAAAATGTAAATAAATTTCAATTTATGAAAAATTAGTGAAATTGCAGGTAATTACAAATATATGTAATCTCTATTTTGTATTACATATATGTGCCCCAACAAAATTTTACTAAAATATATGACATTATGGATCTTGTTGGAAAATTATAAAACTTTAATTCAAAGGCAAAAATAAAATACCCATCAGATGTTCCATGTACGTGATAAGTGCAAGTGCCCACTGACCATTTCAAAATGCACGCAACTGCAAATGTTTTTAATTTTTGCTTCTTATTGCAAATATTAGTACCATTAATATTTTACTAAACACGTGTAGGAAACATTATGAAATTTATAATCTAATGGAAAAACAAAAACTAGGTTATTTCAAATTTGAGATGAGTACGCATACTTGCAAATGTATGCAATTCCTGCTTTGAATTGTAAACATTTTTGTAGATATTTCCGATAACAAAGTTTTATGGATATGAACATAACATTTAAAGTTTGAATGCAGCATCATCAGCAATTGGCAATGGAAGGAAATCGAAACAGGTTTCATCAGAGAGCAGCAGAATATGTTCCAGAAATGCCGACTGCATCAAGAGTGCAACCATTTCAGCCTAATTTGCAACAGTCCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	AFX61409.1	3.6e-105	PISTILLATA-like MADS box protein
Swissprot	Q0HA25.2	1.5e-68	VvMADS9
trEMBL	K7WHJ8	2.6e-105	PISTILLATA-like MADS box protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G20240.1	51.47	3e-57	218	PI	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g497977	AT5G20240.1	204	95	1	1	204	1	200	51.47	3e-57	218
g497977	AT5G23260.1	187	107	2	1	185	1	186	41.18	6e-36	147
g497977	AT5G23260.2	191	107	2	1	185	1	191	40.84	9e-36	146

Ortholog group

Species	Genes
Allium cepa	g207394.t1; g497977.t1
Allium fistulosum	AfisC4G03876; AfisC5G04013
Allium sativum	Asa4G03072.1; Asa4G03473.1; Asa4G03475.1
Arabidopsis thaliana	AT5G20240.1; AT5G23260.1; AT5G23260.2; AT5G23260.3
Oryza sativa	LOC_Os01g66030.1; LOC_Os01g66030.2; LOC_Os05g34940.1; LOC_Os05g34940.2; LOC_Os05g34940.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	57	73.7	5.2e-21
PF01486.14	K-box	Family	82	162	62.5	3e-17

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0010093	P	specification of floral organ identity
GO:0010097	P	specification of stamen identity
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048444	P	floral organ morphogenesis
GO:0048448	P	stamen morphogenesis
GO:0048449	P	floral organ formation
GO:0048455	P	stamen formation
GO:0048466	P	androecium development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0090701
GO:0140110
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network