result

Gene information

Detail information of g499639

Location

Gene	Chr	Start	End	Strand
g499639	Scaffold_88141:HRSCAF_471227	60588	62425	+

Sequences

CDS

>g499639.t1
ATGCCCCAGCCAACTAACAAAATTGGTTGTAAAGTGAAACTCACTTCAAGTTTAGGAGAAGACGGAAAGTGGCGTATAAACAAGTTGTTTCTTGATCACAACCATGACTTAAGTCCTACGAAATCTCGATTCTTTCGATGTTATCGAAAAATTGATGAACATGTAAAAAGACAACTTGAAGTTTGCGATATTGCTGGAATTGGACCTAAGAAAAGTTTTAACGCATTTGTAGTCGATGCCGGTGGACATGAGAACTTGTCATTCATAGAAAAAGATTGTAGAAACTATCTTGATAAGGCAAGACAATTACGCCTTGGAGAAGGAGATGCTGTTGCGATTCAAAACTATTTCCTAAATATGCAGGCACAAAATTATAATTTTTTCTTTAGCATGGACTTAGACAATGATGGCCGACTAAAAAATGTTTTTGGGCAGATGAACGAAGTAGGAAGGCATATAAAGAATTTGGTGACAACGTGGCTTGCATGCATGTCTGATGTTGCTCCTAAAGGAATAATTATAGATCAAGACCGAGCTATGAAAAAGGCAATAGAGATTGCATTTCCTAATACTAGACATCGACTGTGTCTATGGCATGTGATGAAGAAGTTGCCTGAAAAATTTGAAATCCATGGTTTGTATGAATCAATTAAAGGTAATTTGCAAAATGTGGTATATGATTCACAAGGCTCGAAGGAGTTTGAGAAAAGTTGGAAAATAATGTTAGATAAGTTTGACTTGCATGATAATATTTGGTTGAGTGAATTATATAAGGAAAGACATCACTGGGTACCGTGCTTTGTGACATCAAATTTTTGGGCAGGGATGTCCACCACTCAAAGAAGTGAAAGTATTAATGCTTTCTTTGACGGATACGTGAATGCTAAAACCACTTTGAAGCAATTTGTAGAGCAATACAATCACGCATTGAAGGCCAAAATTGAGAAGGAGAGTCAAGCTTACTTCAAGTCATTTTCACAGAGTATTCGATGTGCAACAACGTACGATATAGAGAAGCAATTTCAAAGTGTTTATACACTTAAGAAGTTCAATAAATTTCAAATAGAGTTAACCGCCAAGTTATATTGTGATATAACTGAAACTAGAGAGGGTTTCATGGGTACAGAGTTTGATATAAATGAAGATGTGGCTGTTGAAAATTACAGAAAATTGCTATCATTTACAGTTTTATTTAACAAAGAAAATTGCGAAATTAGTTGTAGTTGTCGAAAGTTTGAGTTTAAAGGTATACTTTGCAGACATGCACTTCTTGTATTGACTAAGAATAATGTGACAACGATTCCGAATAGATATATTTTAGACAGATGGAGAAAAGATGTACTGAGATCTCATACGAGGATCCGGCTCAATTATGATGGTGCACCGGCAACATCTGCACAATTGCGATACAAAGAGATGTGTAATGAATTTTCTAAAGTGGCTGATTTTGTAGCAGATGATGAAGTTTCTTTTAGTCATGTGATGGAATGGATAGACAGTAAGAAGTCTGAATTTTTTCTACAGAAACGCAATACATCTCTTACATGCAAAACTGGTTTAAACAAAGATGAATGTGGTAGGATAAGGGATTGTTCAAAGGTGCAAGATCCAATAAGAAATAAAACCAAAGGACGAACTCGAACAAATAGATTCAAGTCATCCTTGGAGAGAAAAAATGAAGAGAAGTAG

Protein

Gene

>g499639.t1
ATGCCCCAGCCAACTAACAAAATTGGTTGTAAAGTGAAACTCACTTCAAGTTTAGGAGAAGACGGAAAGTGGCGTATAAACAAGTTGTTTCTTGATCACAACCATGACTTAAGTCCTACGAAATCTCGATTCTTTCGATGTTATCGAAAAATTGATGAACATGTAAAAAGACAACTTGAAGTTTGCGATATTGCTGGAATTGGACCTAAGAAAAGTTTTAACGCATTTGTAGTCGATGCCGGTGGACATGAGAACTTGTCATTCATAGAAAAAGATTGTAGAAACTATCTTGATAAGGCAAGACAATTACGCCTTGGAGAAGGAGATGCTGTTGCGATTCAAAACTATTTCCTAAATATGCAGGCACAAAATTATAATTTTTTCTTTAGCATGGACTTAGACAATGATGGCCGACTAAAAAATGTTTTTGGGCAGATGAACGAAGTAGGAAGGCATATAAAGAATTTGGTGACGTTGTCACTTTTGATACAACGTATTTGACAAACAAGTATGACATGCCTTTTGCACCTTTTGTTGGAGTCAACCATCATGGACAATCGATATTACTAGGATGTGGGTTGCTTTCAAGTGAAACAACGGAAACTTTTTTATGGCTTTTCAGAACGTGGCTTGCATGCATGTCTGATGTTGCTCCTAAAGGAATAATTATAGATCAAGACCGAGCTATGAAAAAGGCAATAGAGATTGCATTTCCTAATACTAGACATCGACTGTGTCTATGGCATGTGATGAAGAAGTTGCCTGAAAAATTTGAAATCCATGGTTTGTATGAATCAATTAAAGGTAATTTGCAAAATGTGGTATATGATTCACAAGGCTCGAAGGAGTTTGAGAAAAGTTGGAAAATAATGTTAGATAAGTTTGACTTGCATGATAATATTTGGTTGAGTGAATTATATAAGGAAAGACATCACTGGGTACCGTGCTTTGTGACATCAAATTTTTGGGCAGGGATGTCCACCACTCAAAGAAGTGAAAGTATTAATGCTTTCTTTGACGGATACGTGAATGCTAAAACCACTTTGAAGCAATTTGTAGAGCAATACAATCACGCATTGAAGGCCAAAATTGAGAAGGAGAGTCAAGCTTACTTCAAGTCATTTTCACAGAGTATTCGATGTGCAACAACGTACGATATAGAGAAGCAATTTCAAAGTGTTTATACACTTAAGAAGTTCAATAAATTTCAAATAGAGTTAACCGCCAAGTTATATTGTGATATAACTGAAACTAGAGAGGGTTTCATGGGTACAGAGTTTGATATAAATGAAGATGTGGCTGTTGAAAATTACAGAAAATTGCTATCATTTACAGTTTTATTTAACAAAGAAAATTGCGAAATTAGTTGTAGTTGTCGAAAGTTTGAGTTTAAAGGTATACTTTGCAGACATGCACTTCTTGTATTGACTAAGAATAATGTGACAACGATTCCGAATAGATATATTTTAGACAGATGGAGAAAAGATGTACTGAGATCTCATACGAGGATCCGGCTCAATTATGATGGTGCACCGGCAACATCTGCACAATTGCGATACAAAGAGATGTGTAATGAATTTTCTAAAGTGGCTGATTTTGTAGCAGATGATGAAGTTTCTTTTAGTCATGTGATGGAATGGATAGACAGTAAGAAGTCTGAATTTTTTCTACAGAAACGCAATACATCTCTTACATGCAAAACTGGTTTAAACAAAGATGAATGTGGTAGGATAAGGGATTGTTCAAAGGTGCAAGATCCAATAAGAAATAAAACCAAAGGACGAACTCGAACAAATAGATTCAAGTCATCCTTGGAGAGAAAAAATGAAGAGAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022897637.1	4.5e-166	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	4.6e-75	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A8S0QJ75	1.9e-174	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	32.48	3e-76	283	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g499639	AT4G38180.1	505	275	7	2	450	142	636	32.48	3e-76	283
g499639	AT4G15090.1	532	299	9	7	482	122	640	30.83	3e-70	263
g499639	AT3G22170.2	521	284	9	7	474	154	640	28.79	1e-62	238

Ortholog group

Species	Genes
Allium cepa	g157490.t1; g171993.t1; g338653.t1; g499628.t1; g499637.t1; g499639.t1; g509151.t1
Allium fistulosum	AfisC3G06873
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os11g45530.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	3	39	25.1	1.9e-05
PF10551.6	MULE	Domain	150	203	47.7	1.5e-12
PF04434.14	SWIM	Domain	394	427	34.5	1.1e-08

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network