result

Gene information

Detail information of g500514


Location
GeneChrStartEndStrand
g500514Scaffold_88246:HRSCAF_4713324036862464+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010920864.12.1e-300NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK8.23.1e-240Protein EARLY BIRD
trEMBLA0A6I9R5L71.5e-300NF-X1-type zinc finger protein NFXL2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G05660.154.550.0 920ATNFXL2;EBI;NFXL2sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag500514.t1
Allium fistulosumAfisC2G06648
Allium sativumAsa3G01729.1
Arabidopsis thalianaAT5G05660.1
Oryza sativaLOC_Os01g06550.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01422.14zf-NF-X1Family17218919.70.00057
PF01422.14zf-NF-X1Family22424224.51.9e-05
PF01422.14zf-NF-X1Family27729419.20.00085
PF01422.14zf-NF-X1Family33135018.70.0012
PF01422.14zf-NF-X1Family38440218.10.0019
PF01422.14zf-NF-X1Family40542916.00.0083
PF01422.14zf-NF-X1Family4784888.81.5
PF01422.14zf-NF-X1Family4975065.714
PF01422.14zf-NF-X1Family5795899.70.8
PF01422.14zf-NF-X1Family6306478.32.1
PF01422.14zf-NF-X1Family6957073.285

Gene Ontology
AccessionOntologyName
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000982Ftranscription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001012FRNA polymerase II regulatory region DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001078Ftranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001227Ftranscriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0005488Fbinding
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010310Pregulation of hydrogen peroxide metabolic process
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0016070PRNA metabolic process
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032774PRNA biosynthetic process
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0043170Pmacromolecule metabolic process
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051193Pregulation of cofactor metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:2000377Pregulation of reactive oxygen species metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097659Pnucleic acid-templated transcription
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15683NFXL1, OZFP; NF-X1-type zinc finger protein NFXL1EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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