result

Gene information

Detail information of g50210


Location
GeneChrStartEndStrand
g50210CHR79427156694309791+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020265075.12.2e-148zinc finger CCCH domain-containing protein 8
SwissprotQ941Q3.13.7e-116ENHANCER OF AG-4 protein 1
trEMBLA0A5P1F0H01.6e-148Zinc finger CCCH domain-containing protein 37

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G12680.158.512e-137 486HUA1floral homeotic protein (HUA1)

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Ortholog group
SpeciesGenes
Allium cepag50210.t1
Allium fistulosumAfisC5G02394
Allium sativumAsa3G01842.1; Asa3G02536.1
Arabidopsis thalianaAT3G12680.1
Oryza sativaLOC_Os01g42970.1; LOC_Os01g42970.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00642.21zf-CCCHFamily15117631.88.7e-08
PF00642.21zf-CCCHFamily20322838.28.4e-10
PF00642.21zf-CCCHFamily25327836.43.1e-09
PF00642.21zf-CCCHFamily31834331.79.3e-08
PF00642.21zf-CCCHFamily40142536.82.3e-09
PF00642.21zf-CCCHFamily46148432.54.9e-08

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001709Pcell fate determination
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003723FRNA binding
GO:0003729FmRNA binding
GO:0003730FmRNA 3'-UTR binding
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006417Pregulation of translation
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009893Ppositive regulation of metabolic process
GO:0009894Pregulation of catabolic process
GO:0009896Ppositive regulation of catabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010608Pposttranscriptional regulation of gene expression
GO:0010629Pnegative regulation of gene expression
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0017148Pnegative regulation of translation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031329Pregulation of cellular catabolic process
GO:0031331Ppositive regulation of cellular catabolic process
GO:0032268Pregulation of cellular protein metabolic process
GO:0032269Pnegative regulation of cellular protein metabolic process
GO:0032502Pdevelopmental process
GO:0034248Pregulation of cellular amide metabolic process
GO:0034249Pnegative regulation of cellular amide metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043487Pregulation of RNA stability
GO:0043488Pregulation of mRNA stability
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0045165Pcell fate commitment
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048869Pcellular developmental process
GO:0050779PRNA destabilization
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051246Pregulation of protein metabolic process
GO:0051248Pnegative regulation of protein metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061013Pregulation of mRNA catabolic process
GO:0061014Ppositive regulation of mRNA catabolic process
GO:0061157PmRNA destabilization
GO:0061158P3'-UTR-mediated mRNA destabilization
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1903311Pregulation of mRNA metabolic process
GO:1903313Ppositive regulation of mRNA metabolic process
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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