result

Gene information

Detail information of g502508


Location
GeneChrStartEndStrand
g502508Scaffold_88494:HRSCAF_471580138077138895+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrKAF3330482.14.4e-34Ethylene-responsive transcription factor ABI4
SwissprotA0MES8.24.3e-26Protein SUGAR INSENSITIVE 5
trEMBLA0A833R0J23.2e-34Ethylene-responsive transcription factor ABI4

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G40220.170.801e-28 123ABI4;ATABI4;GIN6;ISI3;SAN5;SIS5;SUN6Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag150233.t1; g150234.t1; g502508.t1; g530854.t1
Allium fistulosumAfisC1G06242; AfisC4G00525; AfisC4G00528; AfisC7G02295
Allium sativumAsa0G01551.1; Asa0G02447.1; Asa3G03031.1; Asa3G03037.1; Asa3G03038.1; Asa4G00588.1; Asa4G00590.1; Asa4G00591.1; Asa5G05309.1; Asa8G05248.1; Asa8G05249.1
Arabidopsis thalianaAT1G25470.1; AT1G25470.2; AT1G43160.1; AT1G68550.1; AT1G68550.2; AT2G20350.1; AT2G40220.1; AT3G25890.1; AT3G25890.2; AT4G34410.1; AT5G67000.1; AT5G67010.1
Oryza sativaLOC_Os05g28350.1; LOC_Os08g36920.1; LOC_Os09g28440.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00847.17AP2Domain529849.34e-13

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000272Ppolysaccharide catabolic process
GO:0001067Fregulatory region nucleic acid binding
GO:0001101Presponse to acid chemical
GO:0008152Pmetabolic process
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0005975Pcarbohydrate metabolic process
GO:0005976Ppolysaccharide metabolic process
GO:0005982Pstarch metabolic process
GO:0005983Pstarch catabolic process
GO:0006073Pcellular glucan metabolic process
GO:0006355Pregulation of transcription, DNA-templated
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0040007Pgrowth
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0009056Pcatabolic process
GO:0009057Pmacromolecule catabolic process
GO:0009251Pglucan catabolic process
GO:0009414Presponse to water deprivation
GO:0009415Presponse to water
GO:0009628Presponse to abiotic stimulus
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009737Presponse to abscisic acid
GO:0009738Pabscisic acid-activated signaling pathway
GO:0009743Presponse to carbohydrate
GO:0009744Presponse to sucrose
GO:0009746Presponse to hexose
GO:0009749Presponse to glucose
GO:0009755Phormone-mediated signaling pathway
GO:0009756Pcarbohydrate mediated signaling
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009894Pregulation of catabolic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010119Pregulation of stomatal movement
GO:0010154Pfruit development
GO:0010182Psugar mediated signaling pathway
GO:0010353Presponse to trehalose
GO:0010449Proot meristem growth
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0010896Pregulation of triglyceride catabolic process
GO:0016052Pcarbohydrate catabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019216Pregulation of lipid metabolic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0022622Proot system development
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031329Pregulation of cellular catabolic process
GO:0031930Pmitochondria-nucleus signaling pathway
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032870Pcellular response to hormone stimulus
GO:0032879Pregulation of localization
GO:0032880Pregulation of protein localization
GO:0033993Presponse to lipid
GO:0034284Presponse to monosaccharide
GO:0034285Presponse to disaccharide
GO:0035266Pmeristem growth
GO:0042221Presponse to chemical
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044042Pglucan metabolic process
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044247Pcellular polysaccharide catabolic process
GO:0044248Pcellular catabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044262Pcellular carbohydrate metabolic process
GO:0044264Pcellular polysaccharide metabolic process
GO:0044275Pcellular carbohydrate catabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048316Pseed development
GO:0048364Proot development
GO:0048507Pmeristem development
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048527Plateral root development
GO:0048528Ppost-embryonic root development
GO:0048589Pdevelopmental growth
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0050994Pregulation of lipid catabolic process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0071215Pcellular response to abscisic acid stimulus
GO:0071229Pcellular response to acid chemical
GO:0071310Pcellular response to organic substance
GO:0071322Pcellular response to carbohydrate stimulus
GO:0071396Pcellular response to lipid
GO:0071495Pcellular response to endogenous stimulus
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090207Pregulation of triglyceride metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:0097306Pcellular response to alcohol
GO:0099402Pplant organ development
GO:1901363Fheterocyclic compound binding
GO:1901575Porganic substance catabolic process
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090696
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09286EREBP; EREBP-like factorEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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