result

Gene information

Detail information of g502956

Location

Gene	Chr	Start	End	Strand
g502956	Scaffold_88550:HRSCAF_471636	71976	75294	+

Sequences

CDS

>g502956.t1
ATGAATTCCCCAAGGGCGATTTCTTTGAGAAAATCCCTTAAAAACTCGCCGTCGTTTCTCCCCCGTTCAATAAAAAACCAAATAAAAATCAACAGAATTCCAACTACCGCCGGTACAATCACCGTCATCTTCAACAACTTAGAATCCATGACAAGCGTCCAACCTAATCTGATATCCGAAATCTCAGGCGGCGTCGCTACGTCGCATCCTCGCCTGAACCCTAGCAACTTGCCGCCATCTCTCGTCAGCAAAGTTTACGATATGGTCGACGATCCATCGACGGACTCCATCATTTGTTGGGGTCTTGATGGCAAAAGCCTCATCATTTTGGATCAGAAATCGCTCACTGAAACTTTGCTTCCCAAGTATTTTAAGCATAACAACCTGTTGAGTTTCATTAGACAGCTAAATCATTATGGGTTCAGAAAAGTTCCAGATAGAACAAGATTAAGGAGCAATCCAAACATAATGGAGTACACAAACGATCATTTTGTGAGAGGCCAGCCACATCTGTTAAAAAATATTACTTACAAGAAAAAGAAATCACTTGATACACAATATCAACCTCAAACTCAAACTGTCAATACTTCCCAACTAATCGAATTAGGAAATTACGGCGGTCTAAAGGAAGAGATAGAGATGCTCAAAAGAGACAAAAACATACTCATGCAAGAATTAATCCGGTTAAAGCAGCAGCAACAGTCCACAAATGATCAGATACAAACCATGTTGAAAAAGATACATATTATGGCACATAGGCAGCAGTTGATGATGTCATTTTTGGCAAAGGCCATGCAACATCCTGATCTCTTTGCTCATTTTGTGCAGCAGCAGAATGACAAAAGTAGTAAGAAAAGGAGATTATCTGATCAAGAAAGTAATCCTTCTTATGGTCAAATGGTTAAATATAAGCCTTTTGTGGATGAATCCATGACTACGATGCTTGAACAAATGCCGAGTACCGAATCATCTCCTATGCTCAAAACTGTAAGTAGTGTCAGTGGTACTTTAGTTAATGATATCCCTAATGATCCTGAAGTTGGTGTGCAAGAAGTTGTACATGATAAATTAGATGGTGTTTCAGTTAATGATAGTCAGAATAAGACTGGGATAGTATCTCCCTCTCCTATCCTTGAATATACGAGCAATGTTAATGATATAGGCAATGCACAAGATGAGCCTCAAGTTGCAGTTTCAGAACTATCTGCAAAAATGCAAGAAAGTGCATCTGGCGAGAACTCTGAAAAGCAAGAGGATGCAATTGCATATTTAAGACAAATCGAGTCCGAATTGGATGATTTTACCACTCCTATCGAGTTTAATGTAGATGATGTTAATTGCTTAGATATCATGAACGAGTTGATGGAAGATATGAGATACGATGAAGGCATTGTAAGTGTACAAAGTGCTGATCTAGCATCAAATAGTGTTAGATGTGAGAATGCACAAAATGTTGATAACCTAGCTGTTCAAATGGAGCTTCTTACTTCGGATTCTAAAGGCTGA

Protein

Gene

>g502956.t1
ATGAATTCCCCAAGGGCGATTTCTTTGAGTAGTGATAGCATGTTGCTTTCTTTAGTTGCACATCATTTGCGTTTTTTGCGCCGAATAATGAAGTCCAGCCCAAGTGCATCCGAAGAATAAGGAAAATCCCTTAAAAACTCGCCGTCGTTTCTCCCCCGTTCAATAAAAAACCAAATAAAAATCAACAGAATTCCAACTACCGCCGGTACAATCACCGTCATCTTCAACAACTTAGAATCCATGACAAGCGTCCAACCTAATCTGATATCCGAAATCTCAGGCGGCGTCGCTACGTCGCATCCTCGCCTGAACCCTAGCAACTTGCCGCCATCTCTCGTCAGCAAAGTTTACGATATGGTCGACGATCCATCGACGGACTCCATCATTTGTTGGGGTCTTGATGGCAAAAGCCTCATCATTTTGGATCAGAAATCGCTCACTGAAACTTTGCTTCCCAAGTATTTTAAGCATAACAACCTGTTGAGTTTCATTAGACAGCTAAATCATTATGTAAGTTTTCATACTTGTTTTGTTCCTGTAAATATACATTATATCGAGGAATTCAGCAATCTTTTCCTTGTAAAGTTACTAAGTTAGTGGTTGAATTGTTATTATTTTTGGCTTTTGATGGAATTGTAAAGCACCAATTTGCATGCTTCGAAATTGGACTTTTAAAGTTCAAAGAATTTGATTATATTCCCATTATGGAGTTTGTGTATATACAAATGTATGTGATGATTTTGGGATGAAACTTAGAGATAATGCTGCCATGCTACCTCATTGGACACCTACTATAATTGCAAGAATTCATCACATAAGATGTGTAATTTGTTACTAATTTGGTTTGCCTTTGGAATGCTATCATCAAATGCGAAATGATGCCAAGTATGCAAGGATTAGAAAGCTATAGGTGAATTTTTGGTATTTGAATGTGTGAATCAAGAATGAAATAGATGGATTGCCAACTTGCCAACTTGCCAACTTGCCAACTTGCCTATGTCTTCTATAGCTTTTACAGTTAGGCATTATCTGATGTTTCTACTGTCCTATCCACTCAATCCCTTTTTCAGCTGATTCTTGTTGTGAGTGATTAATGATAGTAGTAGTACATGCACCATTTTTACATTACCTACATTAGTAGATCGTGGCTGCAACTTGTTTTGCCTATGTATATCCGTATCATATCTATTTGCTTGATGACACTGTTAATGATTTGGGATTTTTTAAGGGAAAATAATAATATGCGCTGGCTCTACTCAAAAAATAATAATATGTGCTAGCCAATTTATGTTACAAATTTAATCTAGTTATATACTACTAGTTGGAAGATTTTAAAAACTGAATTCTGTTTCACTGAATAAGTCGTAAATACTGGTTTTGGATACTATTAGGGACATACTGAACTTGGCTAAAAGGGAAGAATCTACGCGAGACTTTTGTTCATGTTGCATTTGAATCAATATCTGTAATGTGTTTATACCAAAATGATATTTCAGTTCTATTGGGTACTTGGTTAAATTAACTAGGGTATTATAAAATGTTTTGTACCTTTTAAAAATCCCTCCGGTTACAAATTACAACTGAAATATAATTAATTCAAATTTGTATAGATTAGGTCATATGGAATGTTGTTCGAAACCTTTCCAGTAAGTTGATTGGTTTGAAAAAAAAAAGAACCTTTGAACCTACAACGATTACAATGTATGACCTTTTTAGAGCATCTCCAACCCATAAGAATTTGTAATGTGAAGTTAATGCAACATGGGCAACTGACATGATTCTTTAAATTTGCATCTCCAATGGTAATTTAAATTGCTTGTGAAACATGATGTGGCAAGTTTCATATTAAACATTGTGGATACATTGTCTGGTAGTAGACATTCTACTTCACAATGTCAGATAATAACCACCGCCACTATCATATCACATAACAAAAGTTAAACAAACTTAGTTGTTTATTATAATATATTTGCACTGGAGTGAGTAAATATTTCTTTTGTCATTTAACTTTAAAAAATTTCTACATGTATTTCACAATGTGATATAACCAATGACATGCAATCATTGTAAAACATTTCAAGATGAAAAGGTTGGCTCTTACAAAGTTGATGAATTTACTATGAATTGAGATTTGTTTTACATAATGCTGTGCTATCCTGCCTGTACCCTATGAATCTCTAAGTGTAGAATCCACCATAATTCATTCATTCGCATTTTAATGTCGAAACAGGGGTTCAGAAAAGTTCCAGATAGAACAAGATTAAGGAGCAATCCAAACATAATGGAGTACACAAACGATCATTTTGTGAGAGGCCAGCCACATCTGTTAAAAAATATTACTTACAAGAAAAAGAAATCACTTGATACACAATATCAACCTCAAACTCAAACTGTCAATACTTCCCAACTAATCGAATTAGGAAATTACGGCGGTCTAAAGGAAGAGATAGAGATGCTCAAAAGAGACAAAAACATACTCATGCAAGAATTAATCCGGTTAAAGCAGCAGCAACAGTCCACAAATGATCAGATACAAACCATGTTGAAAAAGATACATATTATGGCACATAGGCAGCAGTTGATGATGTCATTTTTGGCAAAGGCCATGCAACATCCTGATCTCTTTGCTCATTTTGTGCAGCAGCAGAATGACAAAAGTAGTAAGAAAAGGAGATTATCTGATCAAGAAAGTAATCCTTCTTATGGTCAAATGGTTAAATATAAGCCTTTTGTGGATGAATCCATGACTACGATGCTTGAACAAATGCCGAGTACCGAATCATCTCCTATGCTCAAAACTGTAAGTAGTGTCAGTGGTACTTTAGTTAATGATATCCCTAATGATCCTGAAGTTGGTGTGCAAGAAGTTGTACATGATAAATTAGATGGTGTTTCAGTTAATGATAGTCAGAATAAGACTGGGATAGTATCTCCCTCTCCTATCCTTGAATATACGAGCAATGTTAATGATATAGGCAATGCACAAGATGAGCCTCAAGTTGCAGTTTCAGAACTATCTGCAAAAATGCAAGAAAGTGCATCTGGCGAGAACTCTGAAAAGCAAGAGGATGCAATTGCATATTTAAGACAAATCGAGTCCGAATTGGATGATTTTACCACTCCTATCGAGTTTAATGTAGATGATGTTAATTGCTTAGATATCATGAACGAGTTGATGGAAGATATGAGATACGATGAAGGCATTGTAAGTGTACAAAGTGCTGATCTAGCATCAAATAGTGTTAGATGTGAGAATGCACAAAATGTTGATAACCTAGCTGTTCAAATGGAGCTTCTTACTTCGGATTCTAAAGGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_031393240.1	5.8e-56	heat shock factor protein HSF8
Swissprot	P41151.2	3.8e-52	Heat shock transcription factor 1
trEMBL	A0A6P8D9C0	4.2e-56	heat shock factor protein HSF8

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G17750.1	42.67	9e-59	224	ATHSF1;ATHSFA1A;HSF1;HSFA1A	heat shock factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g502956	AT4G17750.1	307	130	10	69	341	39	333	42.67	9e-59	224
g502956	AT3G02990.1	285	134	8	75	343	19	292	43.51	7e-58	221
g502956	AT1G32330.1	339	160	5	75	374	32	361	38.64	8e-58	221

Ortholog group

Species	Genes
Allium cepa	g502956.t1
Allium fistulosum	AfisC5G05313
Allium sativum	Asa0G02991.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	82	176	97.0	7e-28

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009408	P	response to heat
GO:0009628	P	response to abiotic stimulus
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network