result

Gene information

Detail information of g503810

Location

Gene	Chr	Start	End	Strand
g503810	Scaffold_88657:HRSCAF_471743	188635	190016	+

Sequences

CDS

Protein

Gene

>g503810.t1
ATGGCAGACAAGAAGAAAAATGGGAAAGAAAATCAGCGTCATACCGTCGATACCTCTCTCTATGCTAACTTGAAGTTAAGTAGAACCTCTCTCTTTAAGTTCATTTGCCTTTGTAATGTTTAGATTTATGCGTCTTCAATAATCCTCGGTTCTCTGATAATGTAATTAGATTGAATTTTTGAATGGATTTTCGCGTTTCGTTCAGTCCATAAATGCCAAAGAGTATTAATGAGATTTCTAAAGATACCTTTTGACTGTAGACATTGTCTAGATCATCCATTATATTTTTAATAGTGAAACTACTGGAGCACTTGATGTAAAACTTACTTTGAATAGAAAGAGCAGACGAGGTCCTCGTTCTAGAAGCTCCCAGTACCGTGGAGTTACTTTTTATAGGAGGACTGGTAGATGGGAATCGCATATTTGGTTTGTCTTCTTCTTTGTTTTTTTTCTTTTTCTTTTTCCTTTTTGTAAACAAATCCAATAACAATTTGATTCTTACGTCGCTCATGCACGCACGCAGGGATTGCGGAAAGCAGGTTTATTTGGGTATGTATCAAGAGAAAAATAATACTAATCTTTAGTTGAAATTCCTTTTCTTTCGATCAACTATATGTAATATGGCAAATATTGTAGGTGGATTTGATACAGCACATGCTGCAGCAAGGTGAGTCATAACAATAAAATACACAATTATTCGATAATTACTCAGTTGCTTGGATTGCACTACAGAGCTTATGATAGAGCAGCAATTAAGTTTCGCGGAGCTGAAGCTGATATAAATTTTGCCCTTGAAGATTATCATGATGATTTGAAACAAGTGAGCTTGTACATTGTTAATTACTTTTCTTCTTCTTTACATTGTCAAGAAAGAATGTAAAGAGGAACATGTACTGTTGTTGAATAGATGAGCAATCTCTCAAAGGAGGAATTTGTGCATGTTCTTCGTAGACAAAGCACTGTGTTTCCAAGAGGAAGTTCAAAATATAGAGGGGTAACATTGCATAAGTGTGGAAGATGGGAGGCAAGAATGGGTCAATTTTTGGGAAGAAAGTAATACTTCTTGAGCTTGTATTTTTTTTAATAACTCTTTCTGTAAGATTGACATGTAAATTTAAATGTTGGAATGTATTAGTAGGTATGTATATTTAGGTCTCTTCGACACTGAAGAGGAAGCTGCAAGGTAAGCCAATCACATTGAGTCTGTAAAGTCTTATGTGTATACTAGTGTGTAGATCGCTAATATGATGTGTTTATTATAAAGAGCCTATGATAAAGCTGCTATAAAATGTAGTGGAAAAGATGCAGTCACCAACTTTGATCCAAGCATTTATGCAGATGAACTTAATTTGAATGGTGAGTACATTATAGCTCAATGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008799004.1	1.4e-88	floral homeotic protein APETALA 2-like isoform X1
Swissprot	A0A0N7KJT8.1	8.8e-91	Protein SHATTERING ABORTION 1
trEMBL	A0A8B7CGX7	2.3e-88	floral homeotic protein APETALA 2-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36920.1	91.82	2e-79	291	AP2;AtAP2;FL1;FLO2	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g503810	AT4G36920.2	159	13	0	48	206	131	289	91.82	2e-79	291
g503810	AT4G36920.2	86	40	4	33	116	209	292	48.84	4e-10	61.6
g503810	AT4G36920.1	159	13	0	48	206	131	289	91.82	2e-79	291

Ortholog group

Species	Genes
Allium cepa	g133784.t1; g275018.t1; g302337.t1; g319506.t1; g478542.t1; g503810.t1; g519777.t1; g69544.t1; g89789.t1
Allium fistulosum	AfisC4G04406
Allium sativum	Asa5G03649.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g55560.2; LOC_Os04g55560.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	47	96	38.3	1e-09
PF00847.17	AP2	Domain	139	187	41.8	8.5e-11

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0010073	P	meristem maintenance
GO:0010093	P	specification of floral organ identity
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0035670	P	plant-type ovary development
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048444	P	floral organ morphogenesis
GO:0048449	P	floral organ formation
GO:0048467	P	gynoecium development
GO:0048481	P	plant ovule development
GO:0048507	P	meristem development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0090701
GO:0140110
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09284	AP2; AP2-like factor, euAP2 lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network