result

Gene information

Detail information of g504071

Location

Gene	Chr	Start	End	Strand
g504071	Scaffold_88695:HRSCAF_471781	299286	301672	+

Sequences

CDS

>g504071.t1
ATGGGGAACTGCTTGAAGTTCTCTTCAACAATTGAGAATGCTTCAGGTTCTTCAAAATCCAGTTTATCATTGTCGATTCCTACATCCAAAACATTTTCAACTGTGTCTACTTTTAGCGCACCTTCTTCTAAAGATAGTCGCAATCTCGATGTGCCTTCTACACGAAGAACAGAAGGAGAAATATTATCATCCTCAAATGTGAAGGCATTTACTTACAATGAACTCAAAATCACAACCAGAAACTTCCGACCAGATGGTCTTTTAGGTGGTGGAGGATTTGGTTATGTCTATAAAGGCTGGATCGATGAGTATACTCTATCTCCATCAAAGCCTGGTTTAGGCATGAAGGTTGCGATTAAGAAACTTAAACCAGAAGGTTTTCAGGGTCATAAAGAGTGGCTGACAGAGGTGGAGTATCTTGGGCAACTCTCACATCCGAACTTAGTTAAGCTAGTTGGATACTGTTTGGATGATGATCATCGGCTTTTGGTGTACGAGTACATGCCAAAAGGCAGTTTGGAGAATCATTTGTTTAGACGAAGCTCTGAACCACTTACATGGTCTGTAAGGATGAACATTGCAGTTGGAGCTGCTAGAGGATTTGCATTCTTGCACGACCGTGAAGCTCAAGTAATATATCGAGATGTGAAGGCATCCAACATCCTCCTTGACTCGGATTTTAACACGAAGCTTTCGGATTTCGGGTTAGCCAAAGCTGGCCCAACCGGAGATAACACTCATGTTTCTACACAAGTCATGGGAACTTATGGTTATGCTGCTCCAGAATACGTAGAAACGGGCCATCTTACTGCAAAAGCCGATGTATACAGCTTCGGAGTAGTGCTTTTAGAACTGCTTTCAGGTCGTAGGGCTGTAGATAGAAATAGAGTAGGTTCAGAGCAAAATCTTGTGACTTGGGCCAAGCCATTTCTTGCAAATAAAAGGAAGGTATACAGAATCATGGATCCAAGACTAGCTAATCAATACCCAAAGAAAGCAGCATACGCTATCTCCATGCTGATACTGCAATGCATTTGCAAGGAAGCGAAGCTCAGACCCAAAATGTCCAATGTTTTAGCTACGCTCGAATCGCTTCAAAACGATGAAGAAATGACGAAACACACCCAAAGTTGTAACTCGATAAAGCATGCAAGTTTCCCAAGGCGGTCTTCTTCTGATGCAAAATCACCATTAGTATGA

Protein

Gene

>g504071.t1
ATGGGGAACTGCTTGAAGTTCTCTTCAACAATTGAGAATGCTTCAGGTTAGGAAACGATGCTATTTTTTTCTTATGTTTTAGTGTATATAGATGTCATAGACTTGCTGTGATTAGGTAATACTAATTGTAGGCTAATTGATATTAGATGGGTTGGTTTCAGCATAATATTACAAAAGTAGCATGTAGTTCAAGGTTGTGTATTTCTTCTTTAGTTTTCAGTACATGTTGAATTCGAACTATTACAATCTAGTTATAAGCTTGGGAAAGAAATGACTCAAATCAGGCACTTTATTGTGTAGGTTCTTCAAAATCCAGTTTATCATTGTCGATTCCTACATCCAAAACATTTTCAACTGTGTCTACTTTTAGCGCACCTTCTTCTAAAGATAGTCGCAATCTCGATGTGCCTTCTACACGAAGAACAGAAGGAGAAATATTATCATCCTCAAATGTGAAGGCATTTACTTACAATGAACTCAAAATCACAACCAGAAACTTCCGACCAGATGGTCTTTTAGGTGGTGGAGGATTTGGTTATGTCTATAAAGGCTGGATCGATGAGTATACTCTATCTCCATCAAAGCCTGGTTTAGGCATGAAGGTTGCGATTAAGAAACTTAAACCAGAAGGTTTTCAGGGTCATAAAGAGTGGCTGGTACAAACAACTATTTTTCTCAAATATTCCTTGTACTTTAATATGAGTGTGTATGAGAGAGGGAGATTTATATACCTCTTAATATGTAGATGAGAATTTTAAAAGATTTTACATGTATGTGCATTACCTAAAGTTAAATTATATTGTTAATTGTAGACAGAGGTGGAGTATCTTGGGCAACTCTCACATCCGAACTTAGTTAAGCTAGTTGGATACTGTTTGGATGATGATCATCGGCTTTTGGTGTACGAGTACATGCCAAAAGGCAGTTTGGAGAATCATTTGTTTAGACGTTAGTATCAAATACAAAAAAGTTGCTATTGACAGTATCATAAAGGTGGAACTGATTTTGAGCAAAATCAAAATTTTGTTTTATTCTTTTGATTCATATCCTTTTTGGGATCATTCAACCAAAAATAGTGTCGATAGCTACGGAGCAAAGGTTTTATATATTCTTCAATAGTGTGTCTAAATGTTCTATTATGTCATGCATGCTTTTATATTAGGAAGCTCTGAACCACTTACATGGTCTGTAAGGATGAACATTGCAGTTGGAGCTGCTAGAGGATTTGCATTCTTGCACGACCGTGAAGCTCAAGTAATATATCGAGATGTGAAGGCATCCAACATCCTCCTTGACTCGGTACGTGTCAATACATATAAGTTAAAGCTATATATATGTAAATCTACATGAAGATCAGAAGCAACTTAATTTTGTTTCATACTTAAAATTAGTTTCGATGGTAACTTTTAAATAATTTCTACTTTCTAATGAATAGCAATATGGAAAGCTTTTTGAATGAATAAGTTGAAATTACAGTAGAATTTAGTTAATAACTGAAACTACTCATAAGCAAAATTGCATGACTTATCACCTTATTAACAGTTTATTTTACCTTTTTATAAGTTGTTTTAGCCACTAGGCAGTTTCCATAAAAATCTACTCATGCGGTAGCTTTTACTGCAGGATTTTAACACGAAGCTTTCGGATTTCGGGTTAGCCAAAGCTGGCCCAACCGGAGATAACACTCATGTTTCTACACAAGTCATGGGAACTTATGGTTATGCTGCTCCAGAATACGTAGAAACGGGTTGGTTTTCATTCTTTTACTAATTTTTTTATTTTATTTTTGACAAGTGTTCATACTTAGGAAAACTAACAAAGAGAATAAATTTCAACCGTTCTTTTTCTCTTTTCTTTTTTTTTTATTTTTATTTTTTTATTAAGCTTAAATTGGTGCTTCAGTCTTTAACCAGAGGAACCACTTGTTTCTTTGCCTGAATTTATCATTTTAATCAGTGTAGCTCATTGTCATGTTGAATGCATCAGGCCATCTTACTGCAAAAGCCGATGTATACAGCTTCGGAGTAGTGCTTTTAGAACTGCTTTCAGGTCGTAGGGCTGTAGATAGAAATAGAGTAGGTTCAGAGCAAAATCTTGTGACTTGGGCCAAGCCATTTCTTGCAAATAAAAGGAAGGTATACAGAATCATGGATCCAAGACTAGCTAATCAATACCCAAAGAAAGCAGCATACGCTATCTCCATGCTGATACTGCAATGCATTTGCAAGGAAGCGAAGCTCAGACCCAAAATGTCCAATGTTTTAGCTACGCTCGAATCGCTTCAAAACGATGAAGAAATGACGAAACACACCCAAAGTTGTAACTCGATAAAGCATGCAAGTTTCCCAAGGCGGTCTTCTTCTGATGCAAAATCACCATTAGTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257330.1	5.5e-150	probable serine/threonine-protein kinase PBL3 isoform X2
Swissprot	O49840.1	5.0e-140	Protein kinase 2B
trEMBL	I1H978	7.9e-143	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02800.1	65.68	1e-144	509	APK2B;Kin2	protein kinase 2B

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g504071	AT2G02800.2	373	127	1	1	372	1	373	65.68	1e-144	509
g504071	AT2G02800.1	373	127	1	1	372	1	373	65.68	1e-144	509
g504071	AT1G14370.1	381	136	2	1	376	1	381	62.99	8e-139	490

Ortholog group

Species	Genes
Allium cepa	g154856.t1; g504071.t1
Allium fistulosum	AfisC4G02191; AfisC4G02192; AfisC7G02075
Allium sativum	Asa3G03186.1; Asa3G03187.1; Asa6G03772.1; Asa6G03773.1
Arabidopsis thaliana	AT2G02800.1; AT2G02800.2
Oryza sativa	LOC_Os03g07430.1; LOC_Os03g07430.2; LOC_Os03g07430.3; LOC_Os03g07430.4; LOC_Os03g07430.5; LOC_Os10g26520.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	88	361	168.1	1.9e-49

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008134	F	transcription factor binding
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0030957	F	Tat protein binding
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network